14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	WE - NF10-13	RNA-Seq	NF10	embryo	Akkers RC et al. (2009)	GSM352204	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/RNA-Seq/Readme.txt
14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	H3K27me3 WE - NF11-12	ChIP-Seq	NF11	embryo	Akkers RC et al. (2009)	GSM352203	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Readme.txt
14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	H3K4me3 WE - NF11-12	ChIP-Seq	NF11	embryo	Akkers RC et al. (2009)	GSM352202	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Readme.txt
14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	Pol II WE - NF11-12	ChIP-Seq	NF11	embryo	Akkers RC et al. (2009)	GSM419463	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_10.0/ChIP-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	skin - adult	RNA-Seq	adult 	skin	Armisen J et al. (2009)	GSM372601	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	oocyte - oocyte III-IV	RNA-Seq	oocyte  III	oocyte	Armisen J et al. (2009)	GSM372603	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	oocyte - oocyte I-II	RNA-Seq	oocyte  I	oocyte	Armisen J et al. (2009)	GSM372602	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	oocyte - oocyte V-VI	RNA-Seq	oocyte  V	oocyte	Armisen J et al. (2009)	GSM372604	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	liver - adult	RNA-Seq	adult 	liver	Armisen J et al. (2009)	GSM372598	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_10.0/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389474	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		microtubule - mature egg	RNA-Seq	mature egg 	egg	Lau NC et al. (2009)	GSM389464	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		egg - mature egg	RNA-Seq	mature egg 	egg	Lau NC et al. (2009)	GSM389477,GSM389478,GSM389479,GSM389480,GSM389481	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		piwil1 ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389473	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		microtubule - mature egg	RNA-Seq	mature egg 	egg	Lau NC et al. (2009)	GSM389476	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389472	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_10.0/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		piwil1 ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389475	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_10.1/RNA-Seq/Readme.txt
19173	Nicolas Robine	Xenopus egg small RNA associated with Y12 antibody	We examined in Xenopus tropicalis eggs piRNAs that are associated with Y12 antibody, which binds symmetrically methylated arginines that are present o	Nicolas Robine, Nelson Lau, Eric Lai	Sequencing of a cDNA library from small RNAs from the Y12 immunoprecipitate	20022248	40809	SRP001702	SNRPB egg - mature egg	RNA-Seq	mature egg 	egg	Robine N et al. (2009)	GSM475282	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_10.0/RNA-Seq/Readme.txt
21482	Gert Jan Veenstra	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how	Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra	ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos	21284373	42761	SRP002372	WE - NF10-12	RNA-Seq	NF10	embryo	van Heeringen SJ et al. (2011)	GSM632116	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Readme.txt
21482	Gert Jan Veenstra	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how	Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra	ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos	21284373	42761	SRP002372	TBP WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2011)	GSM537039	ChIP-Seq/Transcription Factor/TBP	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/ChIP-Seq/Readme.txt
21482	Gert Jan Veenstra	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how	Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra	ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos	21284373	42761	SRP002372	WE - unfertilized egg	RNA-Seq	egg	embryo	van Heeringen SJ et al. (2011)	GSM632117	RNA-Seq/Whole Embryo/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_10.0/RNA-Seq/Readme.txt
22146	Kevin Lebrigand	microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing	Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila	Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand	2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated)  and 26 (ciliated) of Xenopus laevis development	21602795	43315	SRP002578	WE - NF26	RNA-Seq	NF26	embryo	Marcet B et al. (2011)	GSM550781,GSM550782	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Readme.txt
22146	Kevin Lebrigand	microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing	Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila	Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand	2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated)  and 26 (ciliated) of Xenopus laevis development	21602795	43315	SRP002578	WE - NF11-11.5	RNA-Seq	NF11	embryo	Marcet B et al. (2011)	GSM550779,GSM550780	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_10.1/RNA-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF12.5	MBD-Seq	NF12.5	embryo	Bogdanovic O et al. (2011)	GSM589699	MBD-Seq/Epigenetic/	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF12.5	MBD-Seq	NF12.5	embryo	Bogdanovic O et al. (2011)	GSM589697	MBD-Seq/Epigenetic/	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF9	MBD-Seq	NF9	embryo	Bogdanovic O et al. (2011)	GSM589696	MBD-Seq/Epigenetic/	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF9	MBD-Seq	NF9	embryo	Bogdanovic O et al. (2011)	GSM589698	MBD-Seq/Epigenetic/	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_10.0/MBD-Seq/Readme.txt
30067	Juan Larrain	Deep sequencing of small RNAs in the Xenopus tropicalis gastrula	Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous	Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo	Analysis of small RNAs expressed in the Xenopus tropicalis gastrula.	21818339	43632	SRP007217	ventral WE - NF10	RNA-Seq	NF10	embryo	Faunes F et al. (2011)	GSM744254	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Readme.txt
30067	Juan Larrain	Deep sequencing of small RNAs in the Xenopus tropicalis gastrula	Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous	Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo	Analysis of small RNAs expressed in the Xenopus tropicalis gastrula.	21818339	43632	SRP007217	dorsal WE - NF10	RNA-Seq	NF10	dorsal	Faunes F et al. (2011)	GSM744253	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_10.0/RNA-Seq/Readme.txt
30146	Se-Jin Yoon	HEB and E2A function as SMAD/FOXH1 cofactors	Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a 	Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker	ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo.	21828274	43683	SRP007355	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yoon SJ et al. (2011)	GSM746612	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Readme.txt
30146	Se-Jin Yoon	HEB and E2A function as SMAD/FOXH1 cofactors	Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a 	Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker	ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo.	21828274	43683	SRP007355	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yoon SJ et al. (2011)	GSM746611	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_10.0/ChIP-Seq/Readme.txt
33444	Cei Abreu-Goodger	miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones	During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of 	Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt	Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage.	22138647	44540	SRP009183	retina - NF24	RNA-Seq	NF24	retina	Baudet ML et al. (2011)	GSM827025,GSM827026,GSM827027	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Readme.txt
33444	Cei Abreu-Goodger	miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones	During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of 	Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt	Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage.	22138647	44540	SRP009183	retina - NF32	RNA-Seq	NF32	retina	Baudet ML et al. (2011)	GSM827028,GSM827029,GSM827030	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Readme.txt
33444	Cei Abreu-Goodger	miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones	During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of 	Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt	Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage.	22138647	44540	SRP009183	retina - NF40	RNA-Seq	NF40	retina	Baudet ML et al. (2011)	GSM827031,GSM827032,GSM827033	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_10.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF31-32	RNA-Seq	NF31	embryo	Tan MH et al. (2013)	GSM919934,GSM919956	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF5	RNA-Seq	NF5	embryo	Tan MH et al. (2013)	GSM919941	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF44-45	RNA-Seq	NF44	embryo	Tan MH et al. (2013)	GSM919961	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF40	RNA-Seq	NF40	embryo	Tan MH et al. (2013)	GSM919936,GSM919959	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF19	RNA-Seq	NF19	embryo	Tan MH et al. (2013)	GSM919928,GSM919929,GSM919950	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF22-23	RNA-Seq	NF22	embryo	Tan MH et al. (2013)	GSM919931,GSM919952	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF37/38-39	RNA-Seq	NF37/38	embryo	Tan MH et al. (2013)	GSM919958	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF10	RNA-Seq	NF10	embryo	Tan MH et al. (2013)	GSM919923,GSM919945	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF9	RNA-Seq	NF9	embryo	Tan MH et al. (2013)	GSM919922,GSM919944	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF11-12	RNA-Seq	NF11	embryo	Tan MH et al. (2013)	GSM919924,GSM919925,GSM919946	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF2	RNA-Seq	NF2	embryo	Tan MH et al. (2013)	GSM919938	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF13-14	RNA-Seq	NF13	embryo	Tan MH et al. (2013)	GSM919947,GSM919948	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF20-21	RNA-Seq	NF20	embryo	Tan MH et al. (2013)	GSM919930,GSM919951	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF16-18	RNA-Seq	NF16	embryo	Tan MH et al. (2013)	GSM919927,GSM919949	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF41-42	RNA-Seq	NF41	embryo	Tan MH et al. (2013)	GSM919937,GSM919960	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF4	RNA-Seq	NF4	embryo	Tan MH et al. (2013)	GSM919940	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF6	RNA-Seq	NF6	embryo	Tan MH et al. (2013)	GSM919942	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF3	RNA-Seq	NF3	embryo	Tan MH et al. (2013)	GSM919939	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF28	RNA-Seq	NF28	embryo	Tan MH et al. (2013)	GSM919933,GSM919955	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF24-26	RNA-Seq	NF24	embryo	Tan MH et al. (2013)	GSM919932,GSM919953,GSM919954	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF15	RNA-Seq	NF15	embryo	Tan MH et al. (2013)	GSM919926	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF8	RNA-Seq	NF8	embryo	Tan MH et al. (2013)	GSM919943	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF33/34	RNA-Seq	NF33/34	embryo	Tan MH et al. (2013)	GSM919935,GSM919957	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF10 small RNA	RNA-Seq	NF10	embryo	Harding JL et al. (2014)	GSM945998	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF8	RNA-Seq	NF8	embryo	Harding JL et al. (2014)	GSM946002	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF8 small RNA	RNA-Seq	NF8	embryo	Harding JL et al. (2014)	GSM945997	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF18 small RNA	RNA-Seq	NF18	embryo	Harding JL et al. (2014)	GSM945999	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	vegetal pole - NF10	RNA-Seq	NF10	vegetal pole	Harding JL et al. (2014)	GSM946001	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	animal pole - NF10	RNA-Seq	NF10	animal pole	Harding JL et al. (2014)	GSM946000	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF18	RNA-Seq	NF18	embryo	Harding JL et al. (2014)	GSM946004	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF10	RNA-Seq	NF10	embryo	Harding JL et al. (2014)	GSM946003	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_10.0/RNA-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2014)	GSM1009594	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Jarid2 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009602	ChIP-Seq/Transcription Factor/Jarid2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2014)	GSM1009590	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2014)	GSM1009598	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF16	ChIP-Seq	NF16	embryo	van Heeringen SJ et al. (2014)	GSM1009591	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	input WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009604	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF16	ChIP-Seq	NF16	embryo	van Heeringen SJ et al. (2014)	GSM1009595	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009589	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Ezh2 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009601	ChIP-Seq/Transcription Factor/Ezh2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009597	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me1 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009603	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF16	ChIP-Seq	NF16	embryo	van Heeringen SJ et al. (2014)	GSM1009599	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009593	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009600	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009596	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009592	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_10.0/ChIP-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	kidney - adult	RNA-Seq	adult 	kidney	Barbosa-Morais NL et al. (2012)	GSM1015167	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	liver - adult	RNA-Seq	adult 	liver	Barbosa-Morais NL et al. (2012)	GSM1015166	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	skeletal muscle - adult	RNA-Seq	adult 	skeletal muscle	Barbosa-Morais NL et al. (2012)	GSM1015169	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	heart - adult	RNA-Seq	adult 	heart	Barbosa-Morais NL et al. (2012)	GSM1015168	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	brain - adult	RNA-Seq	adult 	brain	Barbosa-Morais NL et al. (2012)	GSM1015165	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_10.0/RNA-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	WE - NF11-12	Bio-CAP-Seq	NF11	embryo	Long HK et al. (2013)	GSM1064693	Bio-CAP-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	input testis - adult	Bio-CAP-Seq	adult 	testis	Long HK et al. (2013)	GSM1064690	Bio-CAP-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	testis - adult	Bio-CAP-Seq	adult 	testis	Long HK et al. (2013)	GSM1064691	Bio-CAP-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	liver - adult	Bio-CAP-Seq	adult 	liver	Long HK et al. (2013)	GSM1064692	Bio-CAP-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_10.0/Bio-CAP-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	ovary - adult	RNA-Seq	adult 	ovary	Necsulea A et al. (2014)	GSM1064865,GSM1196056	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	liver (male) - adult	RNA-Seq	adult 	liver	Necsulea A et al. (2014)	GSM1064862	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	testis - adult	RNA-Seq	adult 	testis	Necsulea A et al. (2014)	GSM1064864,GSM1196057	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	heart (female) - adult	RNA-Seq	adult 	female organism	Necsulea A et al. (2014)	GSM1064859	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	liver (female) - adult	RNA-Seq	adult 	female organism	Necsulea A et al. (2014)	GSM1064863	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	brain (female) - adult	RNA-Seq	adult 	brain	Necsulea A et al. (2014)	GSM1064857	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	kidney (female) - adult	RNA-Seq	adult 	female organism	Necsulea A et al. (2014)	GSM1064861	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	heart (male) - adult	RNA-Seq	adult 	heart	Necsulea A et al. (2014)	GSM1064858	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	brain (male) - adult	RNA-Seq	adult 	brain	Necsulea A et al. (2014)	GSM1064856	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	kidney (male) - adult	RNA-Seq	adult 	kidney	Necsulea A et al. (2014)	GSM1064860	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF9	RNA-Seq	NF9	embryo	Paranjpe SS et al. (2013)	GSM1067625	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF29/30	RNA-Seq	NF29/30	embryo	Paranjpe SS et al. (2013)	GSM1067628	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	oocyte - unfertilized egg rd	RNA-Seq	egg	oocyte	Paranjpe SS et al. (2013)	GSM1067629	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	oocyte - unfertilized egg	RNA-Seq	egg	oocyte	Paranjpe SS et al. (2013)	GSM1067623	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF6 rd	RNA-Seq	NF6	embryo	Paranjpe SS et al. (2013)	GSM1067630	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF16	RNA-Seq	NF16	embryo	Paranjpe SS et al. (2013)	GSM1067627	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF12	RNA-Seq	NF12	embryo	Paranjpe SS et al. (2013)	GSM1067626	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF6	RNA-Seq	NF6	embryo	Paranjpe SS et al. (2013)	GSM1067624	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF9 rd	RNA-Seq	NF9	embryo	Paranjpe SS et al. (2013)	GSM1067631	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_10.0/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115089	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115089	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 control MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115088	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 control MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115088	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_10.1/RNA-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	Xbra WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180932,GSM1180938	ChIP-Seq/Transcription Factor/Xbra	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2013)	GSM1180941	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	Xbra WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2013)	GSM1180940	ChIP-Seq/Transcription Factor/Xbra	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF12.5 (vegt)	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180937	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180933,GSM1180939	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF12.5 (xeomes)	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180935	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	vegt WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180936	ChIP-Seq/Transcription Factor/vegt	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	Eomes WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180934	ChIP-Seq/Transcription Factor/Eomes	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_10.0/ChIP-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE - NF20	RNA-Seq	NF20	embryo	Gentsch GE et al. (2013)	GSM1183062	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + tbxt.2 MO + tbxt MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183056,GSM1183057,GSM1183058	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + tbxt.2 MO + tbxt MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183056,GSM1183057,GSM1183058	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + hbg1 MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183059,GSM1183060,GSM1183061	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + hbg1 MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183059,GSM1183060,GSM1183061	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_10.0/RNA-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	input WE - NF20	ChIP-Seq	NF20	embryo	Chung MI et al. (2014)	GSM1224377	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	animal cap + rfx2 MO - NF20	RNA-Seq	NF20	animal cap	Chung MI et al. (2014)	GSM1224374,GSM1224375	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	animal cap + rfx2 MO - NF20	RNA-Seq	NF20	animal cap	Chung MI et al. (2014)	GSM1224374,GSM1224375	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	rfx2 WE - NF20	ChIP-Seq	NF20	embryo	Chung MI et al. (2014)	GSM1224376	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	rfx2 WE - NF20	ChIP-Seq	NF20	embryo	Chung MI et al. (2014)	GSM1224376	ChIP-Seq/Transcription Factor/Rfx2	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/ChIP-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	animal cap - NF20	RNA-Seq	NF20	animal cap	Chung MI et al. (2014)	GSM1224372,GSM1224373	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF9	RNA-Seq	NF9	embryo	Subtelny AO et al. (2014)	GSM1276565	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF3-4 (Ribo-Seq)	RNA-Seq	NF3	embryo	Subtelny AO et al. (2014)	GSM1276564	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF3-4	RNA-Seq	NF3	embryo	Subtelny AO et al. (2014)	GSM1276563	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF12-12.5	RNA-Seq	NF12	embryo	Subtelny AO et al. (2014)	GSM1316825	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF9 (PAL-Seq)	RNA-Seq	NF9	embryo	Subtelny AO et al. (2014)	GSM1316824	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF12-12.5 (PAL-Seq)	RNA-Seq	NF12	embryo	Subtelny AO et al. (2014)	GSM1316827	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF9 (Ribo-Seq)	RNA-Seq	NF9	embryo	Subtelny AO et al. (2014)	GSM1276566	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF12-12.5 (Ribo-Seq)	RNA-Seq	NF12	embryo	Subtelny AO et al. (2014)	GSM1316826	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF3-4 (PAL-Seq)	RNA-Seq	NF3	embryo	Subtelny AO et al. (2014)	GSM1316823	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_10.1/RNA-Seq/Readme.txt
53652	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a	William Chiu, William Chiu, Ken Cho	Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach.	25359723	49634	SRP034730	Foxh1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298090,GSM1298091	ChIP-Seq/Transcription Factor/Foxh1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Readme.txt
53652	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a	William Chiu, William Chiu, Ken Cho	Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach.	25359723	49634	SRP034730	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298094	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Readme.txt
53652	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a	William Chiu, William Chiu, Ken Cho	Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach.	25359723	49634	SRP034730	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298092,GSM1298093	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_10.0/ChIP-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + foxh1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298098	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + foxh1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298098	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + SB431542 - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298096	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + SB431542 - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298096	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + EtOH - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298095	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + EtOH - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298095	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298097	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_10.0/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350507	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350520	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350520	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE - NF8	RNA-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350522	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350504	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350512	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350510	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350521	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350521	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27me2me3 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350518	ChIP-Seq/Epigenetic/H3K27me2me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350514	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me3 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350508	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	input WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350502	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350513	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27me2me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350519	ChIP-Seq/Epigenetic/H3K27me2me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350511	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	Smad2/3 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350506	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	input WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350503	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350515	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	Smad2/3 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350505	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350525	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350525	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350516	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350509	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE - NF9	RNA-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350523	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27me2me3 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350517	ChIP-Seq/Epigenetic/H3K27me2me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE - NF10.5	RNA-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350524	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_10.0/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	WE + tcf3 MO - NF10.5	RNA-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357041,GSM1357042	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	WE + tcf3 MO - NF10.5	RNA-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357041,GSM1357042	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	Smad2/3 WE + tcf3 MO - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357034,GSM1357035,GSM1357036	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	Smad2/3 WE + tcf3 MO - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357034,GSM1357035,GSM1357036	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	WE - NF10.5	RNA-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357039,GSM1357040	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357037,GSM1357038	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357032,GSM1357033	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_10.0/ChIP-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF5 (2.5hpf) - Series3	RNA-Seq	NF5	embryo	Collart C et al. (2014)	GSM1357570	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (5.5hpf) - Series2	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357554	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (8.0hpf) - Series3 rd	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357592	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (7.0hpf) - Series3 rd	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357591	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (6.0hpf) - Series3 rd	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357590	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.0hpf) - Series1	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357543	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (8.0hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357581	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.0hpf) - Series3 rd	RNA-Seq	NF1	zygote	Collart C et al. (2014)	GSM1357584	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF11.5 (9.5hpf) - Series2	RNA-Seq	NF11.5	embryo	Collart C et al. (2014)	GSM1357562	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (7.5hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357580	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (3.0hpf) - Series3 rd	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357587	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (7.0hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357579	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF11 (9.0hpf) - Series2	RNA-Seq	NF11	embryo	Collart C et al. (2014)	GSM1357561	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.0hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357575	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (4.5hpf) - Series2	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357552,GSM1357563	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10 (9.0hpf) - Series3	RNA-Seq	NF10	embryo	Collart C et al. (2014)	GSM1357583	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF3 (1.5hpf) - Series1	RNA-Seq	NF3	embryo	Collart C et al. (2014)	GSM1357544	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.0hpf) - Series2	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357553	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (4.0hpf) - Series3	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357573	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.5hpf) - Series1	RNA-Seq	NF1	embryo	Collart C et al. (2014)	GSM1357542	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.0hpf) - Series3 rd	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357589	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.5hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357576	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.0hpf) - Series3	RNA-Seq	NF1	zygote	Collart C et al. (2014)	GSM1357565	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.0hpf) - Series3	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357567	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10.25 (7.5hpf) - Series2	RNA-Seq	NF10.25	embryo	Collart C et al. (2014)	GSM1357558	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (6.5hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357578	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10.5 (8.0hpf) - Series2	RNA-Seq	NF10.5	embryo	Collart C et al. (2014)	GSM1357559	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (4.5hpf) - Series3	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357574	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (6.0hpf) - Series2	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357555	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.5hpf) - Series3	RNA-Seq	NF1	embryo	Collart C et al. (2014)	GSM1357566	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (3.0hpf) - Series1	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357547	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (2.5hpf) - Series2	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357548	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (8.5hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357582	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (3.0hpf) - Series2	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357549	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.5hpf) - Series3	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357568	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (2.5hpf) - Series1	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357546	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (3.0hpf) - Series3	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357571	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (3.5hpf) - Series3	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357572	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.0hpf) - Series1	RNA-Seq	NF1	zygote	Collart C et al. (2014)	GSM1357541	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10.5 (8.5hpf) - Series2	RNA-Seq	NF10.5	embryo	Collart C et al. (2014)	GSM1357560	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (6.5hpf) - Series2	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357556,GSM1357564	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (3.5hpf) - Series2	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357550	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (4.0hpf) - Series3 rd	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357588	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF4 (2.0hpf) - Series3 rd	RNA-Seq	NF4	embryo	Collart C et al. (2014)	GSM1357586	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF4 (2.0hpf) - Series3	RNA-Seq	NF4	embryo	Collart C et al. (2014)	GSM1357569	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (4.0hpf) - Series2	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357551	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF5 (2.0hpf) - Series1	RNA-Seq	NF5	embryo	Collart C et al. (2014)	GSM1357545	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10 (7.0hpf) - Series2	RNA-Seq	NF10	embryo	Collart C et al. (2014)	GSM1357557	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (6.0hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357577	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.0hpf) - Series3 rd	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357585	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/Readme.txt
56586	Gert Jan Veenstra	Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs	Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote	Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen	RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos.	25056316	49279	SRP041021	WE - NF1 rd	RNA-Seq	NF1	zygote	Smits AH et al. (2014)	GSM1364749,GSM1364750,GSM1364751,GSM1364752,GSM1364753	RNA-Seq/Embryonic Tissues/fertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Readme.txt
56586	Gert Jan Veenstra	Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs	Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote	Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen	RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos.	25056316	49279	SRP041021	WE - NF10.5 rd technical rep	RNA-Seq	NF10.5	embryo	Smits AH et al. (2014)	GSM1430931,GSM1430932,GSM1430933	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Readme.txt
56586	Gert Jan Veenstra	Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs	Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote	Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen	RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos.	25056316	49279	SRP041021	WE - NF10.5 rd	RNA-Seq	NF10.5	embryo	Smits AH et al. (2014)	GSM1430926,GSM1430927,GSM1430928,GSM1430929,GSM1430930	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_10.1/RNA-Seq/Readme.txt
56680	Maria Warnefors	MicroRNA editing in Xenopus tropicalis	We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific	Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann	Sequencing of 2 small RNA sequencing libraries	24964909	50469	SRP041076	brain - adult	miRNA-Seq	adult 	brain	Warnefors M et al. (2014)	GSM1366781	miRNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Readme.txt
56680	Maria Warnefors	MicroRNA editing in Xenopus tropicalis	We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific	Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann	Sequencing of 2 small RNA sequencing libraries	24964909	50469	SRP041076	heart - adult	miRNA-Seq	adult 	heart	Warnefors M et al. (2014)	GSM1366782	miRNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_10.0/miRNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	animal oocyte - oocyte VI	RNA-Seq	oocyte  VI	animal	Claußen M et al. (2015)	GSM1410597,GSM1410598,GSM1410599,GSM1410600	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	animal oocyte - oocyte VI	RNA-Seq	oocyte  VI	animal	Claußen M et al. (2015)	GSM1410605,GSM1410606	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	vegetal oocyte - oocyte VI	RNA-Seq	oocyte  VI	oocyte	Claußen M et al. (2015)	GSM1410607,GSM1410608	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_10.0/RNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	vegetal oocyte - oocyte VI	RNA-Seq	oocyte  VI	oocyte	Claußen M et al. (2015)	GSM1410601,GSM1410602,GSM1410603,GSM1410604	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434789	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434789	ChIP-Seq/Transcription Factor/E2F4	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434771,GSM1434772,GSM1434773	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434771,GSM1434772,GSM1434773	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap + mcidas - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434790	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap + mcidas - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434790	ChIP-Seq/Transcription Factor/E2F4	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434777,GSM1434778,GSM1434779	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434777,GSM1434778,GSM1434779	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	input animal cap - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434791	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434774,GSM1434775,GSM1434776	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434774,GSM1434775,GSM1434776	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434783,GSM1434784,GSM1434785	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434783,GSM1434784,GSM1434785	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434780,GSM1434781,GSM1434782	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434780,GSM1434781,GSM1434782	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434786,GSM1434787,GSM1434788	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434786,GSM1434787,GSM1434788	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	input animal cap + mcidas - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434792	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_10.1/ChIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 oocyte - adult	CLIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544071,GSM1544072	CLIP-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil2 oocyte - adult	ncRNA-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544077	ncRNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 oocyte - adult	ncRNA-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544076	ncRNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/ncRNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 spermatid - adult	CLIP-Seq	adult 	spermatid	Toombs JA et al. (2017)	GSM1544073	CLIP-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil2 oocyte - adult	CLIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544070	CLIP-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/CLIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil2 oocyte - adult	RIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544079	RIP-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	oocyte - oocyte V-VI	RNA-Seq	oocyte  V	oocyte	Toombs JA et al. (2017)	GSM1544075	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 oocyte - adult	RIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544078	RIP-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	oocyte - oocyte III-IV	RNA-Seq	oocyte  III	oocyte	Toombs JA et al. (2017)	GSM1544074	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_10.0/RNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	oocyte - adult	RNA-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544080	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574075,GSM1574076	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574075,GSM1574076	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574082	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574082	ChIP-Seq/Transcription Factor/Prdm12	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574082	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574081	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574081	ChIP-Seq/Transcription Factor/Prdm12	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	input animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574084	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	input animal cap - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574083	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12-VP16 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574077,GSM1574078	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12-VP16 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574077,GSM1574078	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + nog - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574073,GSM1574074	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + nog - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574073,GSM1574074	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574071,GSM1574072	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + EnR-prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574079,GSM1574080	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + EnR-prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574079,GSM1574080	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_10.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF18-19 (15.5hpf) - ClutchA rd	RNA-Seq	NF18	embryo	Owens ND et al. (2016)	GSM1606296	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11hpf) - ClutchA rd	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606286	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF11 (8hpf) - ClutchA rd	RNA-Seq	NF11	embryo	Owens ND et al. (2016)	GSM1606279	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (64hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606262,GSM1606270	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (14hpf) - ClutchA rd	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606292	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF33/34 (34hpf) - ClutchA	RNA-Seq	NF33/34	embryo	Owens ND et al. (2016)	GSM1606233	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF23 (18.5hpf) - ClutchA	RNA-Seq	NF23	embryo	Owens ND et al. (2016)	GSM1606212	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF32 (32hpf) - ClutchA	RNA-Seq	NF32	embryo	Owens ND et al. (2016)	GSM1606231	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (16.5hpf) - ClutchA	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606208	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21hpf) - ClutchA	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606217	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (56hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606254	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF28 (27hpf) - ClutchA	RNA-Seq	NF28	embryo	Owens ND et al. (2016)	GSM1606226	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21.5hpf) - ClutchA rd	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606309	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (42hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606241	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF31 (30hpf) - ClutchA	RNA-Seq	NF31	embryo	Owens ND et al. (2016)	GSM1606229,GSM1606267	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (6.5hpf) - ClutchA	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606188	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (48hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606246	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF15 (14.5hpf) - ClutchA	RNA-Seq	NF15	embryo	Owens ND et al. (2016)	GSM1606204	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (44hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606242	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3.5hpf) - ClutchA	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606182	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF2- (1hpf) - ClutchA rd	RNA-Seq	NF2-	embryo	Owens ND et al. (2016)	GSM1606284	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11.5hpf) - ClutchA	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606198,GSM1606265	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF15 (14.5hpf) - ClutchA rd	RNA-Seq	NF15	embryo	Owens ND et al. (2016)	GSM1606293	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (17.5hpf) - ClutchA	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606210	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF6 (2.5hpf) - ClutchA	RNA-Seq	NF6	embryo	Owens ND et al. (2016)	GSM1606180	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (4.5hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606318	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (50hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606248	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF29/30 (29hpf) - ClutchA	RNA-Seq	NF29/30	embryo	Owens ND et al. (2016)	GSM1606228	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (46hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606244	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF23 (18.5hpf) - ClutchA rd	RNA-Seq	NF23	embryo	Owens ND et al. (2016)	GSM1606302	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF8 (4hpf) - ClutchA	RNA-Seq	NF8	embryo	Owens ND et al. (2016)	GSM1606183	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (6.5hpf) - ClutchA rd	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606276	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF8 (4hpf) - ClutchA rd	RNA-Seq	NF8	embryo	Owens ND et al. (2016)	GSM1606317	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (17hpf) - ClutchA	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606209	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0hpf) - ClutchA	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606175	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23.5hpf) - ClutchA rd	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606313	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (10hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606283	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606305	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (14hpf) - ClutchA	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606203	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (53hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606251	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (52hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606250,GSM1606269	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF5 (2hpf) - ClutchA	RNA-Seq	NF5	embryo	Owens ND et al. (2016)	GSM1606179	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0.5hpf) - ClutchA rd	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606273	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9.5hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606282	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12hpf) - ClutchA rd	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606288	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF16-17 (15hpf) - ClutchA rd	RNA-Seq	NF16	embryo	Owens ND et al. (2016)	GSM1606294	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (51hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606249	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF6 (2.5hpf) - ClutchA rd	RNA-Seq	NF6	embryo	Owens ND et al. (2016)	GSM1606314	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7.5hpf) - ClutchA	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606190	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (13.5hpf) - ClutchA rd	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606291	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606213	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (24hpf) - ClutchA	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606223	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (16.5hpf) - ClutchA rd	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606298	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23hpf) - ClutchA rd	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606312	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (6hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606275	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (65hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606263	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (47hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606245	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (8.5hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606280	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7.5hpf) - ClutchA rd	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606278	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (10hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606195	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (17hpf) - ClutchA rd	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606299	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9.5hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606194	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (8.5hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606192	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (63hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606261	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (55hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606253	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF16-17 (15hpf) - ClutchA	RNA-Seq	NF16	embryo	Owens ND et al. (2016)	GSM1606205	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (22hpf) - ClutchA rd	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606310	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF35/36 (37hpf) - ClutchA	RNA-Seq	NF35/36	embryo	Owens ND et al. (2016)	GSM1606236	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12.5hpf) - ClutchA	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606200	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20.5hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606216	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (18hpf) - ClutchA rd	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606301	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (62hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606260	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (54hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606252	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF2- (1hpf) - ClutchA	RNA-Seq	NF2-	embryo	Owens ND et al. (2016)	GSM1606177	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (13hpf) - ClutchA rd	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606290	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (58hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606256	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5.5hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606186	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (45hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606243	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12hpf) - ClutchA	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606199	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (57hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606255	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF28 (28hpf) - ClutchA	RNA-Seq	NF28	embryo	Owens ND et al. (2016)	GSM1606227	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (10.5hpf) - ClutchA rd	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606285	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF5 (2hpf) - ClutchA rd	RNA-Seq	NF5	embryo	Owens ND et al. (2016)	GSM1606306	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21hpf) - ClutchA rd	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606308	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11hpf) - ClutchA	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606197	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0hpf) - ClutchA rd	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606271	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19.5hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606304	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (17.5hpf) - ClutchA rd	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606300	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11.5hpf) - ClutchA rd	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606287	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606272	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21.5hpf) - ClutchA	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606218,GSM1606266	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606215	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606281	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3.5hpf) - ClutchA rd	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606316	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (13hpf) - ClutchA	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606201	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF37/38 (40hpf) - ClutchA	RNA-Seq	NF37/38	embryo	Owens ND et al. (2016)	GSM1606239	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (4.5hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606184	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (49hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606247	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (10.5hpf) - ClutchA	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606196	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF3 (1.5hpf) - ClutchA	RNA-Seq	NF3	embryo	Owens ND et al. (2016)	GSM1606178	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF37/38 (39hpf) - ClutchA	RNA-Seq	NF37/38	embryo	Owens ND et al. (2016)	GSM1606238	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF33/34 (33hpf) - ClutchA	RNA-Seq	NF33/34	embryo	Owens ND et al. (2016)	GSM1606232,GSM1606268	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF33/34 (35hpf) - ClutchA	RNA-Seq	NF33/34	embryo	Owens ND et al. (2016)	GSM1606234	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (18hpf) - ClutchA	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606211	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF20 (16hpf) - ClutchA	RNA-Seq	NF20	embryo	Owens ND et al. (2016)	GSM1606207	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (25hpf) - ClutchA	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606224	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (41hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606240	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (6hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606187	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF11 (8hpf) - ClutchA	RNA-Seq	NF11	embryo	Owens ND et al. (2016)	GSM1606191	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (59hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606257	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19.5hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606214	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7hpf) - ClutchA	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606189	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF18-19 (15.5hpf) - ClutchA	RNA-Seq	NF18	embryo	Owens ND et al. (2016)	GSM1606206	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (61hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606259	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3hpf) - ClutchA rd	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606315	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606185	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF32 (31hpf) - ClutchA	RNA-Seq	NF32	embryo	Owens ND et al. (2016)	GSM1606230	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (66hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606264	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606193	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3hpf) - ClutchA	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606181	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF35/36 (36hpf) - ClutchA	RNA-Seq	NF35/36	embryo	Owens ND et al. (2016)	GSM1606235	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20.5hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606307	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606303	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0.5hpf) - ClutchA	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606176	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23hpf) - ClutchA	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606221	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF20 (16hpf) - ClutchA rd	RNA-Seq	NF20	embryo	Owens ND et al. (2016)	GSM1606297	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF37/38 (38hpf) - ClutchA	RNA-Seq	NF37/38	embryo	Owens ND et al. (2016)	GSM1606237	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (22.5hpf) - ClutchA rd	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606311	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7hpf) - ClutchA rd	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606277	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12.5hpf) - ClutchA rd	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606289	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (22.5hpf) - ClutchA	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606220	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5.5hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606274	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (13.5hpf) - ClutchA	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606202	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (22hpf) - ClutchA	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606219	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (26hpf) - ClutchA	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606225	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (60hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606258	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF3 (1.5hpf) - ClutchA rd	RNA-Seq	NF3	embryo	Owens ND et al. (2016)	GSM1606295	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23.5hpf) - ClutchA	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606222	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0.5hpf) - ClutchB	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606320	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0hpf) - ClutchB	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606319	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF3 (1.5hpf) - ClutchB	RNA-Seq	NF3	embryo	Owens ND et al. (2016)	GSM1606322	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (10.5hpf) - ClutchB	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606340	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (10hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606339	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11.5hpf) - ClutchB	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606342	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11hpf) - ClutchB	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606341	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12.5hpf) - ClutchB	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606344	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12hpf) - ClutchB	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606343	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (13.5hpf) - ClutchB	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606346	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (13hpf) - ClutchB	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606345	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF15 (14.5hpf) - ClutchB	RNA-Seq	NF15	embryo	Owens ND et al. (2016)	GSM1606348	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (14hpf) - ClutchB	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606347	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF18-19 (15.5hpf) - ClutchB	RNA-Seq	NF18	embryo	Owens ND et al. (2016)	GSM1606350	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF16-17 (15hpf) - ClutchB	RNA-Seq	NF16	embryo	Owens ND et al. (2016)	GSM1606349	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (16.5hpf) - ClutchB	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606352	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF20 (16hpf) - ClutchB	RNA-Seq	NF20	embryo	Owens ND et al. (2016)	GSM1606351	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (17.5hpf) - ClutchB	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606354	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (17hpf) - ClutchB	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606353	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF23 (18.5hpf) - ClutchB	RNA-Seq	NF23	embryo	Owens ND et al. (2016)	GSM1606356	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (18hpf) - ClutchB	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606355	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19.5hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606358	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606357	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF2- (1hpf) - ClutchB	RNA-Seq	NF2-	embryo	Owens ND et al. (2016)	GSM1606321	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF6 (2.5hpf) - ClutchB	RNA-Seq	NF6	embryo	Owens ND et al. (2016)	GSM1606324	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20.5hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606360	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606359	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21.5hpf) - ClutchB	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606362	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21hpf) - ClutchB	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606361	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (22.5hpf) - ClutchB	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606364	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (22hpf) - ClutchB	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606363	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23.5hpf) - ClutchB	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606366	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23hpf) - ClutchB	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606365	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (24hpf) - ClutchB	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606367	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF5 (2hpf) - ClutchB	RNA-Seq	NF5	embryo	Owens ND et al. (2016)	GSM1606323	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3.5hpf) - ClutchB	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606326	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3hpf) - ClutchB	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606325	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (4.5hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606328	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF8 (4hpf) - ClutchB	RNA-Seq	NF8	embryo	Owens ND et al. (2016)	GSM1606327	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5.5hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606330	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606329	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (6.5hpf) - ClutchB	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606332	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (6hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606331	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606337	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9.5hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606338	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (8.5hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606336	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7.5hpf) - ClutchB	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606334	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7hpf) - ClutchB	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606333	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF11 (8hpf) - ClutchB	RNA-Seq	NF11	embryo	Owens ND et al. (2016)	GSM1606335	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_10.0/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659911	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974230	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659927	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659918	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659907	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659902	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE + alpha amanitin - NF11	RNA-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974231	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE + alpha amanitin - NF11	RNA-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974231	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659900	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659912	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659916	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659942	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659935,GSM1974225	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659935,GSM1974225	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659908	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659941	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659915	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659949	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE - NF11	RNA-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974232	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659930	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659920	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659926	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF8	ChIP-Seq	NF8	embryo	Hontelez S et al. (2015)	GSM1659901	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659904,GSM1974223	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659904,GSM1974223	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659917	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659936,GSM1974226	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE - NF10.5	Bisulfite-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1677167	Bisulfite-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659905,GSM1974224	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659945	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659925	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659921	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659924	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659913	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659940	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659922,GSM1974227	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659922,GSM1974227	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659919	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	input WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659955	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659943	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659944	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659923,GSM1974228	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659906	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659954	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659950	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF8	ChIP-Seq	NF8	embryo	Hontelez S et al. (2015)	GSM1659909	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659929	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE - NF9	Bisulfite-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1875285	Bisulfite-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/Bisulfite-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659933	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF8	ChIP-Seq	NF8	embryo	Hontelez S et al. (2015)	GSM1659932	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659952	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659948	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659938	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659910	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659934	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659896	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659947	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659914	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659931	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659937	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974229	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974229	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659951	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659899	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659928	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659903	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659897	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659953	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659898	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659946	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659939	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_10.0/ChIP-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF29/30	Bisulfite-Seq	NF29/30	embryo	Bogdanović O et al. (2016)	GSM1662791	Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF12	Bisulfite-Seq	NF12	embryo	Bogdanović O et al. (2016)	GSM1662788	Bisulfite-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF9	Bisulfite-Seq	NF9	embryo	Bogdanović O et al. (2016)	GSM1662787	Bisulfite-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF29/30	Bisulfite-Seq	NF29/30	embryo	Bogdanović O et al. (2016)	GSM1662789	Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF43	Bisulfite-Seq	NF43	embryo	Bogdanović O et al. (2016)	GSM1662790	Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	brain - adult	Bisulfite-Seq	adult 	brain	Bogdanović O et al. (2016)	GSM1859499	Bisulfite-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_10.0/Bisulfite-Seq/Readme.txt
68972	Xiaopeng Ma	The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis	To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome	Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu	RNAseq of animal and vegetal blastomeres with 2 biological replicates	26013826	50741	SRP058428	vegetal blastomere - NF4	RNA-Seq	NF4	vegetal blastomere	Sun G et al. (2015)	GSM1689109,GSM1689110	RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Readme.txt
68972	Xiaopeng Ma	The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis	To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome	Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu	RNAseq of animal and vegetal blastomeres with 2 biological replicates	26013826	50741	SRP058428	animal blastomere - NF4	RNA-Seq	NF4	animal blastomere	Sun G et al. (2015)	GSM1689111,GSM1689112	RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_10.1/RNA-Seq/Readme.txt
69701	Daniel Ramire-Gordillo	RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance	Purpose: To identify orthologous genes in Xenopus that are implicated in deafness and vestibular disorders in humans and to compare RNA-Seq and microa	Daniel Ramire-Gordillo, Daniel Ramirez-Gordillo, TuShun Powers, Casilda Trujillo-Provencio, Jennifer van Velkinburgh, Faye Schilkey, Elba Serrano	Inner ear RNA from X. laevis larval stages 56-58 was isolated and shipped to the National Center for Genome Resources, for Illumina-Solexa sequencing or to the Massachusetts Institute of Technology BioMicro Center for microarray analysis with the Affymetrix GeneChip® X. laevis Genome 2.0 Array. RNA-Sequencing was completed using the Illumina-Solexa platform for sequencing by synthesis.  Short-insert paired end (SIPE) libraries were prepared from total RNA according to Illumina’s mRNA-Seq Sample Prep Protocol v2.0 (Illumina, San Diego, CA, USA).  The resultant double-stranded cDNA concentration was measured on a NanoDrop spectrophotometer, and size and purity were determined on the 2100 Bioanalyzer using a DNA 1000 Nano kit. The cDNA libraries were cluster amplified on Illumina flowcells, sequenced on the GAII Sequencer as 36-cycle single-end reads, and processed using Illumina software v1.0.  Illumina reads were aligned to the X. tropicalis genome using the algorithm for genomic mapping and alignment program (GMAP) and Alpheus® Sequence Variant Detection System v3.1.	26582541	51592	SRP059283	inner ear - NF56-58	RNA-Seq	NF56	inner ear	Ramírez-Gordillo D et al. (2015)	GSM1707665	RNA-Seq/Embryonic Tissues/NF56	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_10.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO + Cdx2 MO + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825049,GSM1825050,GSM1825051	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO + Cdx2 MO + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825049,GSM1825050,GSM1825051	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825046,GSM1825047,GSM1825048	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825046,GSM1825047,GSM1825048	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825040,GSM1825041,GSM1825042	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825040,GSM1825041,GSM1825042	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx2 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825043,GSM1825044,GSM1825045	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx2 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825043,GSM1825044,GSM1825045	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825055,GSM1825056,GSM1825057	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + hbg1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825052,GSM1825053,GSM1825054	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + hbg1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825052,GSM1825053,GSM1825054	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO + wnt8a - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867405,GSM1867409,GSM1867413	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO + wnt8a - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867405,GSM1867409,GSM1867413	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO + wnt8a - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867405,GSM1867409,GSM1867413	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	input WE - NF10.25	ChIP-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867401	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + hbg1 MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867403,GSM1867407,GSM1867411	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + hbg1 MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867403,GSM1867407,GSM1867411	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867402,GSM1867406,GSM1867410	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867404,GSM1867408,GSM1867412	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867404,GSM1867408,GSM1867412	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	beta Catenin WE - NF10.25	ChIP-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867400	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_10.0/ChIP-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	eye - adult	RNA-Seq	adult 	eye	Session AM et al. (2016)	GSM1893240,GSM1893254	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	intestine - adult	RNA-Seq	adult 	intestine	Session AM et al. (2016)	GSM1893242,GSM1893256	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	muscle - adult	RNA-Seq	adult 	muscle	Session AM et al. (2016)	GSM1893246,GSM1893260	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	pancreas - adult	RNA-Seq	adult 	pancreas	Session AM et al. (2016)	GSM1893248,GSM1893262	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	heart - adult	RNA-Seq	adult 	heart	Session AM et al. (2016)	GSM1893241,GSM1893255	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	testis - adult	RNA-Seq	adult 	testis	Session AM et al. (2016)	GSM1893252,GSM1893266	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	kidney - adult	RNA-Seq	adult 	kidney	Session AM et al. (2016)	GSM1893243,GSM1893257	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	lung - adult	RNA-Seq	adult 	lung	Session AM et al. (2016)	GSM1893245,GSM1893259	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	ovary - adult	RNA-Seq	adult 	ovary	Session AM et al. (2016)	GSM1893247,GSM1893261	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	brain - adult	RNA-Seq	adult 	brain	Session AM et al. (2016)	GSM1893239,GSM1893253	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	spleen - adult	RNA-Seq	adult 	spleen	Session AM et al. (2016)	GSM1893250,GSM1893264	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	stomach - adult	RNA-Seq	adult 	stomach	Session AM et al. (2016)	GSM1893251,GSM1893265	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	liver - adult	RNA-Seq	adult 	liver	Session AM et al. (2016)	GSM1893244,GSM1893258	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	skin - adult	RNA-Seq	adult 	skin	Session AM et al. (2016)	GSM1893249,GSM1893263	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF25	RNA-Seq	NF25	embryo	Session AM et al. (2016)	GSM1893590,GSM1893604	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF8	RNA-Seq	NF8	embryo	Session AM et al. (2016)	GSM1893584,GSM1893598,GSM1893608	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF10-10.5	RNA-Seq	NF10	embryo	Session AM et al. (2016)	GSM1893586,GSM1893600,GSM1893609	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF9	RNA-Seq	NF9	embryo	Session AM et al. (2016)	GSM1893585,GSM1893599	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF35/36	RNA-Seq	NF35/36	embryo	Session AM et al. (2016)	GSM1893592,GSM1893606,GSM1893610	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	oocyte - oocyte V-VI	RNA-Seq	oocyte  V	oocyte	Session AM et al. (2016)	GSM1893597	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	oocyte - oocyte I-II	RNA-Seq	oocyte  I	oocyte	Session AM et al. (2016)	GSM1893595	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF15	RNA-Seq	NF15	embryo	Session AM et al. (2016)	GSM1893588,GSM1893602	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	oocyte - oocyte III-IV	RNA-Seq	oocyte  III	oocyte	Session AM et al. (2016)	GSM1893596	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF12	RNA-Seq	NF12	embryo	Session AM et al. (2016)	GSM1893587,GSM1893601	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	egg - unfertilized egg	RNA-Seq	egg	egg	Session AM et al. (2016)	GSM1893583,GSM1893594	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF20	RNA-Seq	NF20	embryo	Session AM et al. (2016)	GSM1893589,GSM1893603	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF29/30	RNA-Seq	NF29/30	embryo	Session AM et al. (2016)	GSM1893591,GSM1893605	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF40	RNA-Seq	NF40	embryo	Session AM et al. (2016)	GSM1893593,GSM1893607	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF6	RNA-Seq	NF6	embryo	Peshkin L et al. (2015)	GSM1904665	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF2	RNA-Seq	NF2	embryo	Peshkin L et al. (2015)	GSM1904664	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF14	RNA-Seq	NF14	embryo	Peshkin L et al. (2015)	GSM1904673	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF20	RNA-Seq	NF20	embryo	Peshkin L et al. (2015)	GSM1904676	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - mature egg	RNA-Seq	mature egg 	embryo	Peshkin L et al. (2015)	GSM1904663	RNA-Seq/Whole Embryo/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF18	RNA-Seq	NF18	embryo	Peshkin L et al. (2015)	GSM1904675	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF12	RNA-Seq	NF12	embryo	Peshkin L et al. (2015)	GSM1904672	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF33/34	RNA-Seq	NF33/34	embryo	Peshkin L et al. (2015)	GSM1904680	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF29/30	RNA-Seq	NF29/30	embryo	Peshkin L et al. (2015)	GSM1904679	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF8	RNA-Seq	NF8	embryo	Peshkin L et al. (2015)	GSM1904668,GSM1904669	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF26	RNA-Seq	NF26	embryo	Peshkin L et al. (2015)	GSM1904678	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF23	RNA-Seq	NF23	embryo	Peshkin L et al. (2015)	GSM1904677	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF16	RNA-Seq	NF16	embryo	Peshkin L et al. (2015)	GSM1904674	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF10	RNA-Seq	NF10	embryo	Peshkin L et al. (2015)	GSM1904671	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF6.5	RNA-Seq	NF6.5	embryo	Peshkin L et al. (2015)	GSM1904666	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF9	RNA-Seq	NF9	embryo	Peshkin L et al. (2015)	GSM1904670	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF7	RNA-Seq	NF7	embryo	Peshkin L et al. (2015)	GSM1904667	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF16	RNA-Seq	NF16	embryo	Peshkin L et al. (2015)	GSM1905648	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF29/30	RNA-Seq	NF29/30	embryo	Peshkin L et al. (2015)	GSM1905653	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF12	RNA-Seq	NF12	embryo	Peshkin L et al. (2015)	GSM1905646	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF20	RNA-Seq	NF20	embryo	Peshkin L et al. (2015)	GSM1905650	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF33/34	RNA-Seq	NF33/34	embryo	Peshkin L et al. (2015)	GSM1905654	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF6	RNA-Seq	NF6	embryo	Peshkin L et al. (2015)	GSM1905639	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF6.5	RNA-Seq	NF6.5	embryo	Peshkin L et al. (2015)	GSM1905640	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF26	RNA-Seq	NF26	embryo	Peshkin L et al. (2015)	GSM1905652	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF23	RNA-Seq	NF23	embryo	Peshkin L et al. (2015)	GSM1905651	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF14	RNA-Seq	NF14	embryo	Peshkin L et al. (2015)	GSM1905647	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF7	RNA-Seq	NF7	embryo	Peshkin L et al. (2015)	GSM1905641	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF2	RNA-Seq	NF2	embryo	Peshkin L et al. (2015)	GSM1905638	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF8	RNA-Seq	NF8	embryo	Peshkin L et al. (2015)	GSM1905642,GSM1905643	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF10	RNA-Seq	NF10	embryo	Peshkin L et al. (2015)	GSM1905645	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - mature egg	RNA-Seq	mature egg 	embryo	Peshkin L et al. (2015)	GSM1905637	RNA-Seq/Whole Embryo/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF18	RNA-Seq	NF18	embryo	Peshkin L et al. (2015)	GSM1905649	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF9	RNA-Seq	NF9	embryo	Peshkin L et al. (2015)	GSM1905644	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_10.1/RNA-Seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A** testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912905,GSM1912906	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A adipose tissue - adult	MeDIP-seq	adult 	adipose tissue	Koziol MJ et al. (2016)	GSM1912891,GSM1912892	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	Rabbit IgG testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912899,GSM1912900	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912897,GSM1912898	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	oviduct - adult	MeDIP-seq	adult 	oviduct	Koziol MJ et al. (2016)	GSM1912893,GSM1912894	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A* testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912903,GSM1912904	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912901,GSM1912902	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	adipose tissue - adult	MeDIP-seq	adult 	adipose tissue	Koziol MJ et al. (2016)	GSM1912889,GSM1912890	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A oviduct - adult	MeDIP-seq	adult 	oviduct	Koziol MJ et al. (2016)	GSM1912895,GSM1912896	MeDIP-seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_10.1/MeDIP-seq/Readme.txt
74470	Leonid Peshkin	Transcriptomic Insights into Genetic Diversity of  Protein-Coding Genes in X. laevis	We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio	Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant	We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads.	28283406	53166	SRP065480	WE B strain - NF42	RNA-Seq	NF42	embryo	Savova V et al. (2017)	GSM1921263	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Readme.txt
74470	Leonid Peshkin	Transcriptomic Insights into Genetic Diversity of  Protein-Coding Genes in X. laevis	We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio	Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant	We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads.	28283406	53166	SRP065480	WE B x J cross- NF42	RNA-Seq	NF42	embryo	Savova V et al. (2017)	GSM1921264	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Readme.txt
74470	Leonid Peshkin	Transcriptomic Insights into Genetic Diversity of  Protein-Coding Genes in X. laevis	We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio	Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant	We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads.	28283406	53166	SRP065480	WE J strain - NF42	RNA-Seq	NF42	embryo	Savova V et al. (2017)	GSM1921265	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_10.1/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 1	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937543	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE (female) - adult	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937550,GSM1937551	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF28	WTTS-Seq	NF28	embryo	Zhou X et al. (2016)	GSM1937560,GSM1937561	WTTS-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 7	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937549	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 6	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937548	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 3	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937545	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 5	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937547	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF6	RNA-Seq	NF6	embryo	Zhou X et al. (2016)	GSM1937563,GSM1937564	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF15	WTTS-Seq	NF15	embryo	Zhou X et al. (2016)	GSM1937558,GSM1937559	WTTS-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF11	RNA-Seq	NF11	embryo	Zhou X et al. (2016)	GSM1937567,GSM1937568	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 2	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937544	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF8	RNA-Seq	NF8	embryo	Zhou X et al. (2016)	GSM1937565,GSM1937566	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF11 (WTTS-Seq)	WTTS-Seq	NF11	embryo	Zhou X et al. (2016)	GSM1937556,GSM1937557	WTTS-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult	RNA-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937562	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF8 (WTTS-Seq)	WTTS-Seq	NF8	embryo	Zhou X et al. (2016)	GSM1937554,GSM1937555	WTTS-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 4	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937546	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF6 (WTTS-Seq)	WTTS-Seq	NF6	embryo	Zhou X et al. (2016)	GSM1937552,GSM1937553	WTTS-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_10.0/WTTS-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatid - adult (1)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944504	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me2 spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944474,GSM1944476,GSM1944478	ChIP-Seq/Epigenetic/H3K4me2	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me3 spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944479,GSM1944481,GSM1944483	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944440,GSM1944442,GSM1944444,GSM1944446	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944440,GSM1944442,GSM1944444,GSM1944446	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944440,GSM1944442,GSM1944444,GSM1944446	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatid - adult	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944490,GSM1944492,GSM1944494	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatid - adult (MBD-Seq)	MBD-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944470,GSM1944471,GSM1944472	MBD-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatid - adult (MNase-Seq)	MNase-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944458,GSM1944459,GSM1944460	Chromatin Accessibility/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatid - adult (2)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944503,GSM1944505	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944473,GSM1944475,GSM1944477	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatozoon - adult (MBD-Seq)	MBD-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944461,GSM1944462,GSM1944463	MBD-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatozoon - adult (MBD-Seq)	MBD-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944464,GSM1944465,GSM1944466	MBD-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatozoon - adult (1)	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944488	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatozoon - adult H3K4me3	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944480,GSM1944482	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatid - adult H3K4me3	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944496	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944400,GSM1944412,GSM1944413	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944400,GSM1944412,GSM1944413	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944418,GSM1944420,GSM1944421,GSM1944423	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944418,GSM1944420,GSM1944421,GSM1944423	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944418,GSM1944420,GSM1944421,GSM1944423	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me3 spermatid - adult (1)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944497	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me3 spermatid - adult (2)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944498,GSM1944499	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944402,GSM1944404,GSM1944406,GSM1944408	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944402,GSM1944404,GSM1944406,GSM1944408	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944401,GSM1944410,GSM1944411	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944401,GSM1944410,GSM1944411	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatozoon - adult (MNase-Seq)	MNase-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944455,GSM1944456,GSM1944457	Chromatin Accessibility/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MNase-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944417,GSM1944419,GSM1944422,GSM1944424	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944417,GSM1944419,GSM1944422,GSM1944424	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944417,GSM1944419,GSM1944422,GSM1944424	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatid - adult	RNA-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944414,GSM1944415,GSM1944416	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatozoon - adult (2)	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944487,GSM1944489	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K9me3 spermatid - adult	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944500,GSM1944501,GSM1944502	ChIP-Seq/Epigenetic/H3K9me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatid - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatid - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatid - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K9me3 spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944484,GSM1944485,GSM1944486	ChIP-Seq/Epigenetic/H3K9me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me2 spermatid - adult	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944491,GSM1944493,GSM1944495	ChIP-Seq/Epigenetic/H3K4me2	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatid - adult (MBD-Seq)	MBD-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944467,GSM1944468,GSM1944469	MBD-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944403,GSM1944405,GSM1944407,GSM1944409	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944403,GSM1944405,GSM1944407,GSM1944409	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944439,GSM1944441,GSM1944443,GSM1944445	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944439,GSM1944441,GSM1944443,GSM1944445	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944439,GSM1944441,GSM1944443,GSM1944445	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944447,GSM1944448,GSM1944452,GSM1944454	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944447,GSM1944448,GSM1944452,GSM1944454	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944447,GSM1944448,GSM1944452,GSM1944454	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_10.1/RNA-Seq/Readme.txt
75278	Edward De Robertis	Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula	RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr	Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez	One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced.	27016259	51980	SRP066508	upper blastopore lip - NF10.5	RNA-Seq	NF10.5	upper blastopore lip	Ding Y et al. (2017)	GSM1948718,GSM1948720,GSM1948722	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Readme.txt
75278	Edward De Robertis	Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula	RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr	Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez	One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced.	27016259	51980	SRP066508	WE - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM1948717	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Readme.txt
75278	Edward De Robertis	Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula	RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr	Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez	One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced.	27016259	51980	SRP066508	lower blastopore lip - NF10.5	RNA-Seq	NF10.5	lower blastopore lip	Ding Y et al. (2017)	GSM1948719,GSM1948721,GSM1948723	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_10.1/RNA-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973501	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	ep300 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973495,GSM1973496	ChIP-Seq/Transcription Factor/ep300	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	Pol II WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973499,GSM1973500	ChIP-Seq/Transcription Factor/Pol II	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	H3K36me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973497,GSM1973498	ChIP-Seq/Epigenetic/H3K36me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	H3K4me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973491,GSM1973492	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	H3K4me1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973493,GSM1973494	ChIP-Seq/Epigenetic/H3K4me1	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_10.1/ChIP-Seq/Readme.txt
76247	Ozren Bogdanovic	Single-base resolution methylome of Xenopus laevis embryos	Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing    	Ozren Bogdanovic, Ryan Lister	WGBS profiling of Xenopus laevis st.10.5 embryos	27762356	52612	SRP067679	WE - NF10.5	Bisulfite-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1977638	Bisulfite-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_10.1/Bisulfite-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981745,GSM1981746	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981745,GSM1981746	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981773,GSM1981774	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981767,GSM1981768	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981767,GSM1981768	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981765,GSM1981766	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981765,GSM1981766	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981747,GSM1981748	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981747,GSM1981748	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981763,GSM1981764	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981763,GSM1981764	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981761,GSM1981762	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981761,GSM1981762	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981755,GSM1981756	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981755,GSM1981756	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981749,GSM1981750	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981749,GSM1981750	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981777,GSM1981778	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981777,GSM1981778	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981775,GSM1981776	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981775,GSM1981776	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981779,GSM1981780	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981779,GSM1981780	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981751,GSM1981752	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981751,GSM1981752	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981769,GSM1981770	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981757,GSM1981758	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981757,GSM1981758	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981771,GSM1981772	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981753,GSM1981754	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981753,GSM1981754	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981759,GSM1981760	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981759,GSM1981760	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_10.1/RNA-Seq/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	WE - NF10.5	Hi-C	NF10.5	embryo	Quigley IK et al. (2017)	GSM1982234,GSM1982235	Hi-C/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	animal cap + mcidas - NF18	Hi-C	NF18	animal cap	Quigley IK et al. (2017)	GSM1982233	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	animal cap + mcidas - NF18	Hi-C	NF18	animal cap	Quigley IK et al. (2017)	GSM1982233	Hi-C/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	animal cap - NF18	Hi-C	NF18	animal cap	Quigley IK et al. (2017)	GSM1982232	Hi-C/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_10.1/Hi-C/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 control MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040681,GSM2040682,GSM2040683	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 control MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040681,GSM2040682,GSM2040683	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040684,GSM2040685,GSM2040686	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040684,GSM2040685,GSM2040686	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_10.1/RNA-Seq/Readme.txt
76991	Gert Veenstra	Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068637	WE + kat2a KD - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042204,GSM2042205	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Readme.txt
76991	Gert Veenstra	Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068637	WE + kat2a KD - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042204,GSM2042205	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Readme.txt
76991	Gert Veenstra	Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068637	WE - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042206,GSM2042207	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_10.1/RNA-Seq/Readme.txt
76994	Gert Veenstra	Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068680	WE + tbp + tbpl2 + tbpl1 - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042215,GSM2042216	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Readme.txt
76994	Gert Veenstra	Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068680	WE + tbp + tbpl2 + tbpl1 - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042215,GSM2042216	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Readme.txt
76994	Gert Veenstra	Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068680	WE - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042217,GSM2042218	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_10.1/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + EtOH - NF18	RNA-Seq	NF18	embryo		GSM2047238,GSM2047239,GSM2047240,GSM2047241,GSM2047242	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + EtOH - NF18	RNA-Seq	NF18	embryo		GSM2047238,GSM2047239,GSM2047240,GSM2047241,GSM2047242	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + NRX-204647 - NF18	RNA-Seq	NF18	embryo		GSM2047233,GSM2047234,GSM2047235,GSM2047236,GSM2047237	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + NRX-204647 - NF18	RNA-Seq	NF18	embryo		GSM2047233,GSM2047234,GSM2047235,GSM2047236,GSM2047237	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + NRX-204647 (High) - NF18	RNA-Seq	NF18	embryo		GSM2047228,GSM2047229,GSM2047230,GSM2047231,GSM2047232	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + NRX-204647 (High) - NF18	RNA-Seq	NF18	embryo		GSM2047228,GSM2047229,GSM2047230,GSM2047231,GSM2047232	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_10.1/RNA-Seq/Readme.txt
77363	Richard Harland	Genome-wide binding pattern of β-catenin during Xenopus gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries.	27091726	52028	SRP069034	input WE - NF11.5	ChIP-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050741,GSM2050742,GSM2050743	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Readme.txt
77363	Richard Harland	Genome-wide binding pattern of β-catenin during Xenopus gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries.	27091726	52028	SRP069034	beta Catenin WE - NF11.5	ChIP-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050738,GSM2050739,GSM2050740	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Readme.txt
77363	Richard Harland	Genome-wide binding pattern of β-catenin during Xenopus gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries.	27091726	52028	SRP069034	beta Catenin WE - NF11.5	ChIP-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050738,GSM2050739,GSM2050740	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_10.1/ChIP-Seq/Readme.txt
77364	Richard Harland	Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair.	27091726	52028	SRP069035	WE + dkk1 - NF11.5	RNA-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050745,GSM2050747,GSM2050749	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Readme.txt
77364	Richard Harland	Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair.	27091726	52028	SRP069035	WE + dkk1 - NF11.5	RNA-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050745,GSM2050747,GSM2050749	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Readme.txt
77364	Richard Harland	Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair.	27091726	52028	SRP069035	WE - NF11.5	RNA-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050744,GSM2050746,GSM2050748	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - naive - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057922	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 1 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057926	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 11 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057932	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 7 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057930	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 3 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057928	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - sham surgery control - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057923	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retina - juvenile	RNA-Seq	juvenile 	retina	Whitworth GB et al. (2017)	GSM2057921	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - sham surgery crush - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057924	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 11 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057931	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 1 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057925	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 3 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057927	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 7 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057929	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_10.1/RNA-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	H3K4me3 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068802	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18 - 9hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068810,GSM2068811	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	H3K27ac animal cap - NF18 - 3hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068803	ChIP-Seq/Epigenetic/H3K27ac	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068812	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068814	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	Rad21 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068805	ChIP-Seq/Transcription Factor/Rad21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068808	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068808	ChIP-Seq/Transcription Factor/Foxj1	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	H3K27ac animal cap - NF18 - 9hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068804	ChIP-Seq/Epigenetic/H3K27ac	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068806	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068806	ChIP-Seq/Transcription Factor/Myb	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap + rfx2 MO - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068809	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap + rfx2 MO - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068809	ChIP-Seq/Transcription Factor/Foxj1	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap + rfx2 MO - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068809	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068807	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068807	ChIP-Seq/Transcription Factor/Myb	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18 - 3hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068813	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068815	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_10.1/ChIP-Seq/Readme.txt
78854	Giordano Lippi	Peptide-signaling and miRNA regulation of transmitter switching affecting social preference	Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves	Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer	The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core.	28867550	53988	SRP071089	accessory olfactory bulb + Non-sibling medium - NF45	miRNA-Seq	NF45	accessory olfactory	Dulcis D et al. (2017)	GSM2079621	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt
78854	Giordano Lippi	Peptide-signaling and miRNA regulation of transmitter switching affecting social preference	Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves	Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer	The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core.	28867550	53988	SRP071089	accessory olfactory bulb + Non-sibling medium - NF45	miRNA-Seq	NF45	accessory olfactory	Dulcis D et al. (2017)	GSM2079621	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt
78854	Giordano Lippi	Peptide-signaling and miRNA regulation of transmitter switching affecting social preference	Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves	Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer	The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core.	28867550	53988	SRP071089	accessory olfactory bulb + Sibling medium - NF45	miRNA-Seq	NF45	accessory olfactory	Dulcis D et al. (2017)	GSM2079620	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt
78854	Giordano Lippi	Peptide-signaling and miRNA regulation of transmitter switching affecting social preference	Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves	Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer	The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core.	28867550	53988	SRP071089	accessory olfactory bulb + Sibling medium - NF45	miRNA-Seq	NF45	accessory olfactory	Dulcis D et al. (2017)	GSM2079620	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt
78854	Giordano Lippi	Peptide-signaling and miRNA regulation of transmitter switching affecting social preference	Sensory circuit activation can induce neurotransmitter respecification. To understand the consequences and mechanisms of this neuroplasticity we inves	Giordano Lippi, Davide Dulcis, Christiana Stark, Long Do, Darwin Berg, Nicholas Spitzer	The AOBs of 15 larvae (stage 45) raised in sibling, orphan, or non-sibling conditions were frozen, cryosectioned at 50 μm and neuronal tissue was harvested with scalpels for clean dissection. Total RNA was extracted from tissue with the “Recover All Total Nucleic Acid” isolation kit. RNA quality was assessed on a Bioanalyzer and degraded samples excluded from RNA sequencing. Library preparation and RNA sequencing were performed at the UCSD Biogem core.	28867550	53988	SRP071089	accessory olfactory bulb + Orphan medium - NF45	miRNA-Seq	NF45	accessory olfactory	Dulcis D et al. (2017)	GSM2079619	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78854/XENLA_10.1/miRNA-Seq/Readme.txt
80971	Mary King	High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration	During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants 	Mary King, Dawn Owens, Amanda Butler, Mary King	Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs.	28096217	53019	SRP074230	animal pole - oocyte VI	RNA-Seq	oocyte  VI	animal pole	Owens DA et al. (2017)	GSM2139449,GSM2139451,GSM2139453	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Readme.txt
80971	Mary King	High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration	During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants 	Mary King, Dawn Owens, Amanda Butler, Mary King	Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs.	28096217	53019	SRP074230	vegetal pole - oocyte VI	RNA-Seq	oocyte  VI	vegetal pole	Owens DA et al. (2017)	GSM2139450,GSM2139452,GSM2139454	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_10.1/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	vegetal yolk mass - NF10-10.25	RNA-Seq	NF10	vegetal yolk mass	Blitz IL et al. (2017)	GSM2152754,GSM2152755	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	animal cap - NF10-10.25	RNA-Seq	NF10	animal cap	Blitz IL et al. (2017)	GSM2152748,GSM2152749	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	ventral marginal zone - NF10-10.25	RNA-Seq	NF10	ventral marginal zon	Blitz IL et al. (2017)	GSM2152756,GSM2152757	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	WE - NF10-10.25	RNA-Seq	NF10	embryo	Blitz IL et al. (2017)	GSM2152758,GSM2152759	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	lateral marginal zone - NF10-10.25	RNA-Seq	NF10	lateral	Blitz IL et al. (2017)	GSM2152752,GSM2152753	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	dorsal marginal zone - NF10-10.25	RNA-Seq	NF10	dorsal marginal zone	Blitz IL et al. (2017)	GSM2152750,GSM2152751	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_10.0/RNA-Seq/Readme.txt
82153	Saartje Hontelez	CDK9 knock-out Xenopus tropicalis	To study the role of CDK9 in RNAPII pausing                                                                                                           	Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis	Knock-down of CDK9 by injection of CDK9.S morpholino	0	57687	SRP076016	Pol II WE + cdk9 MO - NF16	ChIP-Seq	NF16	embryo		GSM2184890	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt
82153	Saartje Hontelez	CDK9 knock-out Xenopus tropicalis	To study the role of CDK9 in RNAPII pausing                                                                                                           	Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis	Knock-down of CDK9 by injection of CDK9.S morpholino	0	57687	SRP076016	Pol II WE + cdk9 MO - NF16	ChIP-Seq	NF16	embryo		GSM2184890	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt
82153	Saartje Hontelez	CDK9 knock-out Xenopus tropicalis	To study the role of CDK9 in RNAPII pausing                                                                                                           	Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis	Knock-down of CDK9 by injection of CDK9.S morpholino	0	57687	SRP076016	Pol II WE + hbg1 cMO - NF16	ChIP-Seq	NF16	embryo		GSM2184891	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt
82153	Saartje Hontelez	CDK9 knock-out Xenopus tropicalis	To study the role of CDK9 in RNAPII pausing                                                                                                           	Saartje Hontelez, GertJan Veenstra, Marta Marin-Barba, Grant Wheeler, Ines Desanlis	Knock-down of CDK9 by injection of CDK9.S morpholino	0	57687	SRP076016	Pol II WE + hbg1 cMO - NF16	ChIP-Seq	NF16	embryo		GSM2184891	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE82153/XENTR_10.0/ChIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + CAbmpr1a - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218802,GSM2218803,GSM2218804	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + CAbmpr1a - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218802,GSM2218803,GSM2218804	miRNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + nog - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218805,GSM2218806,GSM2218807	miRNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + nog - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218805,GSM2218806,GSM2218807	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + CAbmpr1a - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218808,GSM2218809,GSM2218810,GSM2218811	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + CAbmpr1a - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218808,GSM2218809,GSM2218810,GSM2218811	RIP-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + nog - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218822,GSM2218823,GSM2218824	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + nog - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218822,GSM2218823,GSM2218824	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + nog - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218812,GSM2218813,GSM2218814,GSM2218815	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + nog - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218812,GSM2218813,GSM2218814,GSM2218815	RIP-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + CAbmpr1a - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218819,GSM2218820,GSM2218821	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + CAbmpr1a - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218819,GSM2218820,GSM2218821	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218816,GSM2218817,GSM2218818	RIP-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_10.1/RIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Foxa2 WE - NF10.25	ChIP-Seq	NF10.25	embryo	Charney RM et al. (2017)	GSM2263597	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Foxa2 WE - NF10.25	ChIP-Seq	NF10.25	embryo	Charney RM et al. (2017)	GSM2263597	ChIP-Seq/Transcription Factor/Foxa2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Pol II WE - NF10.25	ChIP-Seq	NF10.25	embryo	Charney RM et al. (2017)	GSM2263595	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Pol II WE - NF7	ChIP-Seq	NF7	embryo	Charney RM et al. (2017)	GSM2263592	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Foxh1 WE - NF8	ChIP-Seq	NF8	embryo	Charney RM et al. (2017)	GSM2263590	ChIP-Seq/Transcription Factor/Foxh1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Pol II WE - NF8	ChIP-Seq	NF8	embryo	Charney RM et al. (2017)	GSM2263593	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Pol II WE - NF9	ChIP-Seq	NF9	embryo	Charney RM et al. (2017)	GSM2263594	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	TLE WE - NF8	ChIP-Seq	NF8	embryo	Charney RM et al. (2017)	GSM2263596	ChIP-Seq/Transcription Factor/Tle	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	Foxh1 WE - NF9	ChIP-Seq	NF9	embryo	Charney RM et al. (2017)	GSM2263591	ChIP-Seq/Transcription Factor/Foxh1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	input WE - NF8	ChIP-Seq	NF8	embryo	Charney RM et al. (2017)	GSM2263598	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	input WE - NF9	ChIP-Seq	NF9	embryo	Charney RM et al. (2017)	GSM2263600	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
85273	Rebekah Charney	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	We examined the binding dynamics of the maternal TF Foxh1 over a time course of germ layer development. Foxh1 binding was compared to the onset of zyg	Rebekah Charney, Ken Cho	ChIP-seq analysis of transcription factors Foxh1 and Foxa, RNA Polymerase II and the co-repressor TLE, during zygotic gene activation and germ layer development. Includes biological replicates and stage-matched input controls. Five Samples from GSE53652 are included in this study. The reanalyzed processed data for these Samples are on the Series record.	28325473	53575	SRP081096	input WE - NF8	ChIP-Seq	NF8	embryo	Charney RM et al. (2017)	GSM2263599	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE85273/XENTR_10.0/ChIP-Seq/Readme.txt
86382	Stephanie Ceman	RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus	MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the	Stephanie Ceman, Geena Skariah	The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates.	29266590	54381	SRP084249	WE - NF10.5	RNA-Seq	NF10.5	embryo	Skariah G et al. (2018)	GSM2301411,GSM2301412,GSM2301413	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt
86382	Stephanie Ceman	RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus	MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the	Stephanie Ceman, Geena Skariah	The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates.	29266590	54381	SRP084249	WE - NF10.5	RNA-Seq	NF10.5	embryo	Skariah G et al. (2018)	GSM2301411,GSM2301412,GSM2301413	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt
86382	Stephanie Ceman	RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus	MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the	Stephanie Ceman, Geena Skariah	The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates.	29266590	54381	SRP084249	WE + mov10 MO - NF10.5	RNA-Seq	NF10.5	embryo	Skariah G et al. (2018)	GSM2301414,GSM2301415	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt
86382	Stephanie Ceman	RISC factor MOV10 is required for normal development and viability in both mouse and Xenopus	MOV10 is an RNA helicase that functions in the miRNA pathway. Our study shows that a knockdown of MOV10 in mouse is embryonic lethal. To determine the	Stephanie Ceman, Geena Skariah	The analysis includes 5 samples. Three of these are control morpholino injected stage 10.5 embryos. The remaining 2 are MOV10 morpholino treated embryos from the same stage. The samples are biological replicates.	29266590	54381	SRP084249	WE + mov10 MO - NF10.5	RNA-Seq	NF10.5	embryo	Skariah G et al. (2018)	GSM2301414,GSM2301415	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86382/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308334,GSM2308335	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308334,GSM2308335	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308334,GSM2308335	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308342,GSM2308343	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308342,GSM2308343	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308342,GSM2308343	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308330,GSM2308331	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308330,GSM2308331	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308330,GSM2308331	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308330,GSM2308331	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308338,GSM2308339	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308338,GSM2308339	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308338,GSM2308339	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - neurog2-GR + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308338,GSM2308339	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308340,GSM2308341	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308340,GSM2308341	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308340,GSM2308341	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308340,GSM2308341	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308332,GSM2308333	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308332,GSM2308333	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308332,GSM2308333	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a-GR{W224A/W242A} + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308332,GSM2308333	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308336,GSM2308337	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308336,GSM2308337	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308336,GSM2308337	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF26	RNA-Seq	NF26	animal cap		GSM2308336,GSM2308337	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308328,GSM2308329	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308328,GSM2308329	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308328,GSM2308329	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86649	Gabriela Salinas-Riester	Comparative temporal analysis of wild-type Ptf1a, Neurog2 and mutant Ptf1a (Ptf1aW224A/W242A) overexpressing Xenopus explant transcriptomes after 6 and 25 hours of DEX induction.	RNA-seq reveals the downstream gene regulatory network of wild-type Ptf1a, Neurog2 and Ptf1aW224A/W242A                                               	Gabriela Salinas-Riester, Kristine Henningfeld, Tomas Pieler, Marie Hedderich, Thomas Lingner	X.laevis embryos were injected in the animal pole of both blastomeres at the two-cell stage with 20 pg mRNA encoding for ptf1a-GR, GR-neurog2 or ptf1aW224A/W242A-GR. At blastula stage, inijected DEX-treated animal caps served as controls (CC).	0	57684	SRP089812	animal cap - ptf1a + DEX + animal cap explant - NF10.5-11	RNA-Seq	NF10.5	animal cap		GSM2308328,GSM2308329	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86649/XENLA_10.1/RNA-Seq/Readme.txt
86883	Cei Abreu-Goodger	miR-182 regulates Slit2-mediated axon guidance by modulating the local translation of a specific mRNA	During brain wiring, mRNAs are trafficked into axons and growth cones where they are differentially translated in response to extrinsic signals. Diffe	Cei Abreu-Goodger, Anaïs Bellon, Archana Iyer, Simone Bridi, Flora Lee, Cesaré Ovando-Vázquez, Eloina Corradi, Sara Longhi, Michela Rocuzzo, Stephanie Strohbuecker, Sindhu Naik, Peter Sarkies, Eric Miska, Christine Holt, Marie-Laure Baudet	Two biological replicates, one condition	28147273	53046	SRP089815	axon - eye explant - NF37/38	miRNA-Seq	NF37/38	axon	Bellon A et al. (2017)	GSM2309835,GSM2309836	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Readme.txt
86883	Cei Abreu-Goodger	miR-182 regulates Slit2-mediated axon guidance by modulating the local translation of a specific mRNA	During brain wiring, mRNAs are trafficked into axons and growth cones where they are differentially translated in response to extrinsic signals. Diffe	Cei Abreu-Goodger, Anaïs Bellon, Archana Iyer, Simone Bridi, Flora Lee, Cesaré Ovando-Vázquez, Eloina Corradi, Sara Longhi, Michela Rocuzzo, Stephanie Strohbuecker, Sindhu Naik, Peter Sarkies, Eric Miska, Christine Holt, Marie-Laure Baudet	Two biological replicates, one condition	28147273	53046	SRP089815	axon - eye explant - NF37/38	miRNA-Seq	NF37/38	axon	Bellon A et al. (2017)	GSM2309835,GSM2309836	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE86883/XENLA_10.1/miRNA-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337686	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337686	ChIP-Seq/Transcription Factor/ep300	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut + BIO - NF20 (p300)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337689	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337678	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337678	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input WE - NF20 (smad1)	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337673	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	Smad1 WE - NF20	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337674	ChIP-Seq/Transcription Factor/Smad1	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin foregut - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337676	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin hindgut - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337680	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 foregut - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337684	ChIP-Seq/Transcription Factor/ep300	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337682	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337682	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 WE - NF20	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337672	ChIP-Seq/Transcription Factor/ep300	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut + BIO - NF20 (p300)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337685	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 hindgut - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337688	ChIP-Seq/Transcription Factor/ep300	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut - NF20 (bcat)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337679	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337690	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337690	ChIP-Seq/Transcription Factor/ep300	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut + BIO - NF20 (bcat)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337677	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut + BIO - NF20 (bcat)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337681	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut - NF20 (p300)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337687	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input WE - NF20 (p300)	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337671	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut - NF20 (p300)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337683	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut - NF20 (bcat)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337675	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_10.1/ChIP-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + dkk1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337718,GSM2337719	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + dkk1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337718,GSM2337719	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut mesoderm - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337726,GSM2337727	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337700,GSM2337701,GSM2337702	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + DMH1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337703,GSM2337704,GSM2337705	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + DMH1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337703,GSM2337704,GSM2337705	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + BIO - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337706,GSM2337707,GSM2337708	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + BIO - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337706,GSM2337707,GSM2337708	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut mesoderm - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337722,GSM2337723	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + DMH1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337694,GSM2337695,GSM2337696	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + DMH1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337694,GSM2337695,GSM2337696	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut endoderm - NF20	RNA-Seq	NF20	foregut primordium	Stevens ML et al. (2017)	GSM2337720,GSM2337721	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + BIO - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337697,GSM2337698,GSM2337699	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + BIO - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337697,GSM2337698,GSM2337699	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337691,GSM2337692,GSM2337693	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337716,GSM2337717	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337716,GSM2337717	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + dkk1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337714,GSM2337715	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + dkk1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337714,GSM2337715	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut endoderm - NF20	RNA-Seq	NF20		Stevens ML et al. (2017)	GSM2337724,GSM2337725	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337712,GSM2337713	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337712,GSM2337713	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	dorsal embryo - NF20	RNA-Seq	NF20	dorsal	Stevens ML et al. (2017)	GSM2337709,GSM2337710,GSM2337711	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	tail - NF40	RNA-Seq	NF40	tail	Chang J et al. (2017)	GSM2356631,GSM2356632	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF40	RNA-Seq	NF40	regenerating tail	Chang J et al. (2017)	GSM2356633,GSM2356634	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF40	RNA-Seq	NF40	regenerating tail	Chang J et al. (2017)	GSM2356633,GSM2356634	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF42	RNA-Seq	NF42	regenerating tail	Chang J et al. (2017)	GSM2356636	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF42	RNA-Seq	NF42	regenerating tail	Chang J et al. (2017)	GSM2356636	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF40 +6h	RNA-Seq	NF40	regenerating tail	Chang J et al. (2017)	GSM2356635	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF40 +6h	RNA-Seq	NF40	regenerating tail	Chang J et al. (2017)	GSM2356635	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF43	RNA-Seq	NF43	regenerating tail	Chang J et al. (2017)	GSM2356637,GSM2356638	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF43	RNA-Seq	NF43	regenerating tail	Chang J et al. (2017)	GSM2356637,GSM2356638	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF47	RNA-Seq	NF47	regenerating tail	Chang J et al. (2017)	GSM2356639,GSM2356640	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
88975	Jessica Chang	RNA-Seq of Xenopus tail regeneration	In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including complete appendages. Following tail am	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Whole tail (WT) samples were obtained from an an initial amputation.  Immediately thereafter, a second amputation was performed on the cut tadpole to obtain 0 hour time point samples.  The 0 hpa time point samples the tissue directly adjacent to the initial cut site.  Regenerating tail samples collected up to 72 hpa.
Expression profiling of six time points in tadpole tail regeneration were sequenced in duplicate via Illumina HiSeq.	28095651	53040	SRP091865	regenerating tail + tail amputation - NF47	RNA-Seq	NF47	regenerating tail	Chang J et al. (2017)	GSM2356639,GSM2356640	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE88975/XENTR_10.0/RNA-Seq/Readme.txt
89165	Zhihua Jiang	Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis.	We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus	Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang	Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries from two male frogs and two female frogs were involved in this submission.	30729254	55685	SRP092052	female organism - adult	WTTS-Seq	adult 	female organism	Zhou X et al. (2019)	GSM2359906,GSM2359907	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Readme.txt
89165	Zhihua Jiang	Usage of Alternative Polyadenylation Sites Differs Dramatically Between Male and Female Xenopus tropicalis.	We applied our recently released Whole Transcriptome Termini Site sequencing protocol to profile usage of alternative polyadenylation sites in Xenopus	Zhihua Jiang, Xiang Zhou, Jennifer Michal, Yangzi Zhang	Total RNA samples derived from whole body homogenates of individual adult frogs were used to construct WTTS-seq libraries. Four WTTS-seq libraries from two male frogs and two female frogs were involved in this submission.	30729254	55685	SRP092052	male organism - adult	WTTS-Seq	adult 	male organism	Zhou X et al. (2019)	GSM2359908,GSM2359909	WTTS-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89165/XENTR_10.0/WTTS-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363463	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363463	ChIP-Seq/Transcription Factor/Foxn4	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 MO - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363460,GSM2363461	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 MO - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363460,GSM2363461	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 MO - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363460,GSM2363461	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363462	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363462	ChIP-Seq/Transcription Factor/Foxn4	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	input animal cap - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363464,GSM2363465,GSM2363466,GSM2363467,GSM2363468,GSM2363469	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxj1 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363456,GSM2363457	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxj1 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363456,GSM2363457	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxj1 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363456,GSM2363457	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2364660,GSM2364661,GSM2364662	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2364660,GSM2364661,GSM2364662	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363458,GSM2363459	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363458,GSM2363459	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363458,GSM2363459	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428183,GSM2428184,GSM2428185,GSM2428186	RNA-Seq/Embryonic Tissue/Gastrula  NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428212,GSM2428213,GSM2428214,GSM2428215	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428243,GSM2428244,GSM2428245,GSM2428246	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428200,GSM2428201,GSM2428202	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428191,GSM2428192,GSM2428193,GSM2428194	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428228,GSM2428229,GSM2428230,GSM2428231	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428187,GSM2428188,GSM2428189	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428187,GSM2428188,GSM2428189	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428203,GSM2428204,GSM2428205,GSM2428206,GSM2428207	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428203,GSM2428204,GSM2428205,GSM2428206,GSM2428207	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428195,GSM2428196,GSM2428197,GSM2428198	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428195,GSM2428196,GSM2428197,GSM2428198	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428251,GSM2428252,GSM2428253,GSM2428254	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428251,GSM2428252,GSM2428253,GSM2428254	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428251,GSM2428252,GSM2428253,GSM2428254	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428247,GSM2428248,GSM2428249,GSM2428250	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428247,GSM2428248,GSM2428249,GSM2428250	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428247,GSM2428248,GSM2428249,GSM2428250	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428216,GSM2428217,GSM2428218,GSM2428219	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428216,GSM2428217,GSM2428218,GSM2428219	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428216,GSM2428217,GSM2428218,GSM2428219	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428232,GSM2428233,GSM2428234,GSM2428235	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428232,GSM2428233,GSM2428234,GSM2428235	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428232,GSM2428233,GSM2428234,GSM2428235	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428220,GSM2428221,GSM2428222,GSM2428223	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428220,GSM2428221,GSM2428222,GSM2428223	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428220,GSM2428221,GSM2428222,GSM2428223	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428236,GSM2428237,GSM2428238	RNA-Seq/Embryonic Tissue/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428236,GSM2428237,GSM2428238	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428236,GSM2428237,GSM2428238	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428182	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428190	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428199	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L{K4M} - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428241,GSM2428242	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L{K4M} - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428241,GSM2428242	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428239,GSM2428240	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428239,GSM2428240	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428208,GSM2428209	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428208,GSM2428209	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428210,GSM2428211	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428210,GSM2428211	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428226,GSM2428227	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428226,GSM2428227	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	H3K4me3 endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428255	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	input endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428256	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	input endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428258	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	H3K4me3 endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428257	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428224,GSM2428225	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428224,GSM2428225	Manipulations/mRNA injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/Readme.txt
92382	Simon van Heeringen	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome	Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra	Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos.	29065907	54195	SRP095103	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	Elurbe DM et al. (2017)	GSM2428815,GSM2428816	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Readme.txt
92382	Simon van Heeringen	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome	Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra	Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos.	29065907	54195	SRP095103	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	Elurbe DM et al. (2017)	GSM2428817,GSM2428818	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Readme.txt
92382	Simon van Heeringen	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome	Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra	Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos.	29065907	54195	SRP095103	ep300 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Elurbe DM et al. (2017)	GSM2428827,GSM2428828	ChIP-Seq/Transcription Factor/ep300	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Readme.txt
92382	Simon van Heeringen	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome	Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra	Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos.	29065907	54195	SRP095103	ep300 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Elurbe DM et al. (2017)	GSM2428829,GSM2428830	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Readme.txt
92382	Simon van Heeringen	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome	Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra	Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos.	29065907	54195	SRP095103	input WE - NF9	ChIP-Seq	NF9	embryo	Elurbe DM et al. (2017)	GSM2428821,GSM2428822	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/ChIP-Seq/Readme.txt
92382	Simon van Heeringen	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome	Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra	Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos.	29065907	54195	SRP095103	input WE - NF9	ChIP-Seq	NF9	embryo	Elurbe DM et al. (2017)	GSM2428823,GSM2428824	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENTR_10.0/ChIP-Seq/Readme.txt
92382	Simon van Heeringen	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Genome duplication has played a pivotal role in the evolution of many eukaryotic lineages, including the vertebrates.The most recent vertebrate genome	Simon van Heeringen, Sarita Paranjpe, Georgios Georgiou, Ila van Kruijsbergen, Romain Gibeaux, Rebecca Heald, Simon van Heeringen, Gert Veenstra	Genomic DNA of Xenopus tropicalis and Xenopus laevis; RNA-seq (two replicates) in stage 10.5 Xenopus laevis embryos; ChIP-seq for H3K4me3 and p300 (each two replicates) in Xenopus laevis (LELS), Xenopus tropicalis (TETS) and Xenopus tropicals x laevis (hybrid; LETS) embryos.	29065907	54195	SRP095103	WE - NF10.5	RNA-Seq	NF10.5	embryo	Elurbe DM et al. (2017)	GSM2428813,GSM2428814	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92382/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446136,GSM2446140	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446136,GSM2446140	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446137,GSM2446141	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446137,GSM2446141	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	dorsal WE - dorsal explant - NF10.5	RNA-Seq	NF10.5	dorsal	Ding Y et al. (2017)	GSM2446100,GSM2446105,GSM2446111,GSM2446113,GSM2446115	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446118,GSM2446121,GSM2446124	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446118,GSM2446121,GSM2446124	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446128,GSM2446131,GSM2446134	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446128,GSM2446131,GSM2446134	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446099,GSM2446109	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446099,GSM2446109	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446119,GSM2446122,GSM2446125	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446119,GSM2446122,GSM2446125	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446104,GSM2446110	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446104,GSM2446110	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446097,GSM2446102,GSM2446107,GSM2446117,GSM2446120,GSM2446123	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	ventral WE - ventral explant - NF10.5	RNA-Seq	NF10.5	ventral	Ding Y et al. (2017)	GSM2446101,GSM2446106,GSM2446112,GSM2446114,GSM2446116	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446126,GSM2446129,GSM2446132,GSM2446135,GSM2446139	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446138,GSM2446142	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446138,GSM2446142	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446098,GSM2446103,GSM2446108	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446098,GSM2446103,GSM2446108	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446127,GSM2446130,GSM2446133	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446127,GSM2446130,GSM2446133	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_10.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537314,GSM2537315,GSM2537316	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537314,GSM2537315,GSM2537316	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537323,GSM2537324,GSM2537325	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537323,GSM2537324,GSM2537325	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537317,GSM2537318,GSM2537319	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537317,GSM2537318,GSM2537319	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537326,GSM2537327,GSM2537328	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537326,GSM2537327,GSM2537328	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{-/+}, tbxt.2{-/+} - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537332,GSM2537333,GSM2537334	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{-/+}, tbxt.2{-/+} - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537332,GSM2537333,GSM2537334	Mutant Lines	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{-/+}, tbxt.2{-/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537341,GSM2537342,GSM2537343	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{-/+}, tbxt.2{-/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537341,GSM2537342,GSM2537343	Mutant Lines	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537311,GSM2537312,GSM2537313	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537320,GSM2537321,GSM2537322	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537329,GSM2537330,GSM2537331	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537329,GSM2537330,GSM2537331	Mutant Lines	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537338,GSM2537339,GSM2537340	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537338,GSM2537339,GSM2537340	Mutant Lines	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	brain (male) - adult	RNA-Seq	adult 	brain	Marin R et al. (2017)	GSM2563124,GSM2563125	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	brain (female) - adult	RNA-Seq	adult 	brain	Marin R et al. (2017)	GSM2563122,GSM2563123	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	heart (female) - adult	RNA-Seq	adult 	heart	Marin R et al. (2017)	GSM2563126,GSM2563127	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	heart (male) - adult	RNA-Seq	adult 	heart	Marin R et al. (2017)	GSM2563128,GSM2563129	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	kidney (female) - adult	RNA-Seq	adult 	kidney	Marin R et al. (2017)	GSM2563130,GSM2563131	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	kidney (male) - adult	RNA-Seq	adult 	kidney	Marin R et al. (2017)	GSM2563132,GSM2563133	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	liver (female) - adult	RNA-Seq	adult 	liver	Marin R et al. (2017)	GSM2563134,GSM2563135	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	liver (male) - adult	RNA-Seq	adult 	liver	Marin R et al. (2017)	GSM2563136,GSM2563137	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	ovary - adult	RNA-Seq	adult 	ovary	Marin R et al. (2017)	GSM2563138,GSM2563139	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	testis - adult	RNA-Seq	adult 	testis	Marin R et al. (2017)	GSM2563140,GSM2563141	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_10.0/RNA-Seq/Readme.txt
100434	Neil Hukriede	Regulation of kidney field specification by transcriptional regulation of microRNAs	The transcriptional events driving specification of the kidney field have been well characterized.  However, it remains unknown how the initial field 	Neil Hukriede, Neil Hukriede, M Cirio	miRNA Deep sequencing of 3 Xenopus laevis samples	30375416	55420	SRP110298	dorsal embryo - NF10.5	miRNA-Seq	NF10.5	dorsal	Espiritu EB et al. (2018)	GSM2683080	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt
100434	Neil Hukriede	Regulation of kidney field specification by transcriptional regulation of microRNAs	The transcriptional events driving specification of the kidney field have been well characterized.  However, it remains unknown how the initial field 	Neil Hukriede, Neil Hukriede, M Cirio	miRNA Deep sequencing of 3 Xenopus laevis samples	30375416	55420	SRP110298	dorsal embryo + fry MO - NF10.5	miRNA-Seq	NF10.5	dorsal	Espiritu EB et al. (2018)	GSM2683082	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt
100434	Neil Hukriede	Regulation of kidney field specification by transcriptional regulation of microRNAs	The transcriptional events driving specification of the kidney field have been well characterized.  However, it remains unknown how the initial field 	Neil Hukriede, Neil Hukriede, M Cirio	miRNA Deep sequencing of 3 Xenopus laevis samples	30375416	55420	SRP110298	dorsal embryo + fry MO - NF10.5	miRNA-Seq	NF10.5	dorsal	Espiritu EB et al. (2018)	GSM2683082	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt
100434	Neil Hukriede	Regulation of kidney field specification by transcriptional regulation of microRNAs	The transcriptional events driving specification of the kidney field have been well characterized.  However, it remains unknown how the initial field 	Neil Hukriede, Neil Hukriede, M Cirio	miRNA Deep sequencing of 3 Xenopus laevis samples	30375416	55420	SRP110298	dorsal embryo + lhx1-AS - NF10.5	miRNA-Seq	NF10.5	dorsal	Espiritu EB et al. (2018)	GSM2683081	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt
100434	Neil Hukriede	Regulation of kidney field specification by transcriptional regulation of microRNAs	The transcriptional events driving specification of the kidney field have been well characterized.  However, it remains unknown how the initial field 	Neil Hukriede, Neil Hukriede, M Cirio	miRNA Deep sequencing of 3 Xenopus laevis samples	30375416	55420	SRP110298	dorsal embryo + lhx1-AS - NF10.5	miRNA-Seq	NF10.5	dorsal	Espiritu EB et al. (2018)	GSM2683081	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE100434/XENLA_10.1/miRNA-Seq/Readme.txt
102047	Mary Lou King	The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development	Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so	Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King	Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development.	29158442	54309	SRP114372	endoderm - NF12	RNA-Seq	NF12	endoderm	Butler AM et al. (2018)	GSM2722410,GSM2722411,GSM2722412	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Readme.txt
102047	Mary Lou King	The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development	Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so	Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King	Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development.	29158442	54309	SRP114372	primordial germ cell - NF12	RNA-Seq	NF12	primordial germ cell	Butler AM et al. (2018)	GSM2722413,GSM2722414,GSM2722415	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5/	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF14	RNA-Seq	NF14	embryo	Plouhinec JL et al. (2017)	GSM2758863,GSM2758864	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate border - NF14	RNA-Seq	NF14	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758810,GSM2758842,GSM2758853,GSM2758857,GSM2758867	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate border - NF12.5	RNA-Seq	NF12.5	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758818,GSM2758825,GSM2758833	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	anterior neural fold, preplacodal ectoderm - NF14	RNA-Seq	NF14	anterior neural fold	Plouhinec JL et al. (2017)	GSM2758846,GSM2758852,GSM2758854,GSM2758859,GSM2758862	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	neural plate - NF14	RNA-Seq	NF14	neural plate	Plouhinec JL et al. (2017)	GSM2758815,GSM2758816	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate - NF14	RNA-Seq	NF14	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758839,GSM2758845,GSM2758847	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	posterior non-neural ectoderm - NF14	RNA-Seq	NF14	non-neur. ecto.	Plouhinec JL et al. (2017)	GSM2758844,GSM2758850,GSM2758851	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	neural plate border - NF14	RNA-Seq	NF14	neural plate border	Plouhinec JL et al. (2017)	GSM2758813,GSM2758814,GSM2758883,GSM2758887	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate - NF12.5	RNA-Seq	NF12.5	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758817,GSM2758824,GSM2758832	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate - NF12.5	RNA-Seq	NF12.5	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758821,GSM2758828,GSM2758836	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate border - NF14	RNA-Seq	NF14	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758809,GSM2758841,GSM2758849,GSM2758856,GSM2758865,GSM2758866	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	neural crest - NF17	RNA-Seq	NF17	neural crest	Plouhinec JL et al. (2017)	GSM2758811,GSM2758812,GSM2758882,GSM2758884	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate border, preplacodal ectoderm - NF12.5	RNA-Seq	NF12.5	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758823,GSM2758830,GSM2758838	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF12.5	RNA-Seq	NF12.5	embryo	Plouhinec JL et al. (2017)	GSM2758870,GSM2758877	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	lateral neural plate border - NF12.5	RNA-Seq	NF12.5	neural plate border	Plouhinec JL et al. (2017)	GSM2758819,GSM2758826,GSM2758834	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	anterior non-neural ectoderm - NF14	RNA-Seq	NF14	non-neur. ecto.	Plouhinec JL et al. (2017)	GSM2758843,GSM2758858,GSM2758861	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF12	RNA-Seq	NF12	embryo	Plouhinec JL et al. (2017)	GSM2758869,GSM2758876	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	preplacodal ectoderm - NF17	RNA-Seq	NF17	preplacodal ectoderm	Plouhinec JL et al. (2017)	GSM2758885,GSM2758886	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate border - NF12.5	RNA-Seq	NF12.5	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758822,GSM2758829,GSM2758831,GSM2758837	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF18-19	RNA-Seq	NF18	embryo	Plouhinec JL et al. (2017)	GSM2758874,GSM2758881	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF11.5	RNA-Seq	NF11.5	embryo	Plouhinec JL et al. (2017)	GSM2758868,GSM2758875	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF16-17	RNA-Seq	NF16	embryo	Plouhinec JL et al. (2017)	GSM2758873,GSM2758880	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF13	RNA-Seq	NF13	embryo	Plouhinec JL et al. (2017)	GSM2758871,GSM2758878	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	non-neural ectoderm - NF12.5	RNA-Seq	NF12.5	non-neur. ecto.	Plouhinec JL et al. (2017)	GSM2758820,GSM2758827,GSM2758835	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF14-15	RNA-Seq	NF14	embryo	Plouhinec JL et al. (2017)	GSM2758872,GSM2758879	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate - NF14	RNA-Seq	NF14	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758840,GSM2758848,GSM2758855,GSM2758860	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_10.1/RNA-Seq/Readme.txt
103526	Sai Linlin	Next Generation Sequencing Facilitates Quantitative Analysis of testis Transcriptomes in Xenopus laevis	Purpose: Circular RNAs (circRNAs) are implicated in multiple developmental anomalies. The goals of this study are to research whether circRNAs involve	Sai Linlin	Examing circRNAs of testes of  X. laevis from 2 conditions including AZ-treated and control, each with 3 replicates, using Illumina HiSeq 4000	0	60260	SRP117033	testis - adult	RNA-Seq	adult 	testis		GSM2773066,GSM2773067,GSM2773068	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Readme.txt
103526	Sai Linlin	Next Generation Sequencing Facilitates Quantitative Analysis of testis Transcriptomes in Xenopus laevis	Purpose: Circular RNAs (circRNAs) are implicated in multiple developmental anomalies. The goals of this study are to research whether circRNAs involve	Sai Linlin	Examing circRNAs of testes of  X. laevis from 2 conditions including AZ-treated and control, each with 3 replicates, using Illumina HiSeq 4000	0	60260	SRP117033	testis + Atrazine - adult	RNA-Seq	adult 	testis		GSM2773063,GSM2773064,GSM2773065	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Readme.txt
103526	Sai Linlin	Next Generation Sequencing Facilitates Quantitative Analysis of testis Transcriptomes in Xenopus laevis	Purpose: Circular RNAs (circRNAs) are implicated in multiple developmental anomalies. The goals of this study are to research whether circRNAs involve	Sai Linlin	Examing circRNAs of testes of  X. laevis from 2 conditions including AZ-treated and control, each with 3 replicates, using Illumina HiSeq 4000	0	60260	SRP117033	testis + Atrazine - adult	RNA-Seq	adult 	testis		GSM2773063,GSM2773064,GSM2773065	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103526/XENLA_10.1/RNA-Seq/Readme.txt
104848	Radek Šindelka	RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis	We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding	Radek Šindelka, Radek Sindelka, Pavel Abaffy	RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq.	29844480	54969	SRP119791	vegetal pole - NF1	RNA-Seq	NF1	vegetal pole	Sindelka R et al. (2018)	GSM2808772,GSM2808777,GSM2808782	RNA-Seq/Embryonic Tissues/fertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt
104848	Radek Šindelka	RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis	We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding	Radek Šindelka, Radek Sindelka, Pavel Abaffy	RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq.	29844480	54969	SRP119791	animal pole - NF1	RNA-Seq	NF1	animal pole	Sindelka R et al. (2018)	GSM2808768,GSM2808773,GSM2808778	RNA-Seq/Embryonic Tissues/fertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt
104848	Radek Šindelka	RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis	We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding	Radek Šindelka, Radek Sindelka, Pavel Abaffy	RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq.	29844480	54969	SRP119791	equatorial belt - NF1	RNA-Seq	NF1	equatorial belt	Sindelka R et al. (2018)	GSM2808770,GSM2808775,GSM2808780	RNA-Seq/Embryonic Tissues/fertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt
104848	Radek Šindelka	RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis	We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding	Radek Šindelka, Radek Sindelka, Pavel Abaffy	RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq.	29844480	54969	SRP119791	animal hemisphere - NF1	RNA-Seq	NF1	animal hemisphere	Sindelka R et al. (2018)	GSM2808769,GSM2808774,GSM2808779	RNA-Seq/Embryonic Tissues/fertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt
104848	Radek Šindelka	RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis	We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding	Radek Šindelka, Radek Sindelka, Pavel Abaffy	RNA profiles (mRNA, lncRNA, other RNA) were generated by deep sequencing, in biological triplicates (each oocyte divided into five segments), using Illumina HiSeq.	29844480	54969	SRP119791	vegetal hemisphere - NF1	RNA-Seq	NF1	vegetal hemisphere	Sindelka R et al. (2018)	GSM2808771,GSM2808776,GSM2808781	RNA-Seq/Embryonic Tissues/fertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE104848/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	dorsal embryo explant - NF12	RNA-Seq	NF12	dorsal	Ding Y et al. (2018)	GSM2835931	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	dorsal embryo explant - NF12	RNA-Seq	NF12	dorsal	Ding Y et al. (2018)	GSM2835931	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	ventral embryo explant - NF12	RNA-Seq	NF12	ventral	Ding Y et al. (2018)	GSM2835932	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	ventral embryo explant - NF12	RNA-Seq	NF12	ventral	Ding Y et al. (2018)	GSM2835932	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835917,GSM2835921,GSM2835923,GSM2835927	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835917,GSM2835921,GSM2835923,GSM2835927	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + tissue dissociation - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835918,GSM2835922,GSM2835924	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + tissue dissociation - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835918,GSM2835922,GSM2835924	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + tissue dissociation - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835918,GSM2835922,GSM2835924	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + bmp4 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835919	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + bmp4 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835919	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + bmp4 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835919	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + cer1 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835926	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + cer1 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835926	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + cer1 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835926	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant+ fgf8 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835928	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant+ fgf8 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835928	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant+ fgf8 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835928	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + wnt8a - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835925	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + wnt8a - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835925	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + wnt8a - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835925	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + wnt8a + nodal2 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835930	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + wnt8a + nodal2 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835930	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + wnt8a + nodal2 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835930	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + nodal2 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835929	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + nodal2 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835929	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + nodal2 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835929	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + chrd.1 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835920	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + chrd.1 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835920	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
106320	Edward De Robertis	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis	The Xenopus laevis embryo has been subjected to almost saturating screens for molecules specifically expressed in dorsal Spemann organizer tissue. In 	Edward De Robertis, Yi Ding, Gabriele Colozza, Eric Sosa, Yuki Moriyama, Samantha Rundle, Lukasz Salwinski	A genome-wide study of the effects of vavious growth factors and dissociation on animal caps of Xenopus laevis	30209221	55302	SRP122914	animal cap explant + chrd.1 - NF12	RNA-Seq	NF12	animal cap	Ding Y et al. (2018)	GSM2835920	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE106320/XENLA_10.1/RNA-Seq/Readme.txt
107424	Rita Monteiro	Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis	We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen	Rita Monteiro, Rita Monteiro, James Smith, George Gentsch	Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses.	29709598	54855	SRP125755	WE + LiCl - NF11/11.5	RNA-Seq	NF11	embryo	Monteiro RS et al. (2018)	GSM2866830,GSM2866831,GSM2866832,GSM2866833,GSM2866834	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Readme.txt
107424	Rita Monteiro	Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis	We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen	Rita Monteiro, Rita Monteiro, James Smith, George Gentsch	Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses.	29709598	54855	SRP125755	WE + UV - NF11/11.5	RNA-Seq	NF11	embryo	Monteiro RS et al. (2018)	GSM2866835,GSM2866836,GSM2866837,GSM2866838,GSM2866839	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Readme.txt
107424	Rita Monteiro	Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis	We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen	Rita Monteiro, Rita Monteiro, James Smith, George Gentsch	Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses.	29709598	54855	SRP125755	WE - NF11/11.5 	RNA-Seq	NF11	embryo	Monteiro RS et al. (2018)	GSM2866840,GSM2866841,GSM2866842,GSM2866843,GSM2866844	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_10.0/RNA-Seq/Readme.txt
111171	Pawel Smialowski	The Xenopus animal cap transcriptome: building a mucociliary epithelium.	Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis.  To obtain RNA expression data, we used	Pawel Smialowski, Alessandro Angerilli, Ralph Rupp	Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s  expression and splicing isoforms expression	30165493	55254	SRP133568	animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Angerilli A et al. (2018)	GSM3024606	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt
111171	Pawel Smialowski	The Xenopus animal cap transcriptome: building a mucociliary epithelium.	Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis.  To obtain RNA expression data, we used	Pawel Smialowski, Alessandro Angerilli, Ralph Rupp	Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s  expression and splicing isoforms expression	30165493	55254	SRP133568	animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Angerilli A et al. (2018)	GSM3024606	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt
111171	Pawel Smialowski	The Xenopus animal cap transcriptome: building a mucociliary epithelium.	Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis.  To obtain RNA expression data, we used	Pawel Smialowski, Alessandro Angerilli, Ralph Rupp	Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s  expression and splicing isoforms expression	30165493	55254	SRP133568	animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2018)	GSM3024607	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt
111171	Pawel Smialowski	The Xenopus animal cap transcriptome: building a mucociliary epithelium.	Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis.  To obtain RNA expression data, we used	Pawel Smialowski, Alessandro Angerilli, Ralph Rupp	Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s  expression and splicing isoforms expression	30165493	55254	SRP133568	animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2018)	GSM3024607	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt
111171	Pawel Smialowski	The Xenopus animal cap transcriptome: building a mucociliary epithelium.	Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis.  To obtain RNA expression data, we used	Pawel Smialowski, Alessandro Angerilli, Ralph Rupp	Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s  expression and splicing isoforms expression	30165493	55254	SRP133568	animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2018)	GSM3024608	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt
111171	Pawel Smialowski	The Xenopus animal cap transcriptome: building a mucociliary epithelium.	Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis.  To obtain RNA expression data, we used	Pawel Smialowski, Alessandro Angerilli, Ralph Rupp	Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s  expression and splicing isoforms expression	30165493	55254	SRP133568	animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2018)	GSM3024608	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111171/XENTR_10.0/RNA-Seq/Readme.txt
111454	Ye Jin	RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis	The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes	Ye Jin, Daniel Weinstein	mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz.	29530451	54672	SRP134011	animal cap - NF18 + pitx1 mRNA	RNA-Seq	NF17	animal cap	Jin Y et al. (2018)	GSM3031399,GSM3031401	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Readme.txt
111454	Ye Jin	RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis	The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes	Ye Jin, Daniel Weinstein	mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz.	29530451	54672	SRP134011	animal cap - NF18	RNA-Seq	NF17	animal cap	Jin Y et al. (2018)	GSM3031400,GSM3031402	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_10.1/RNA-Seq/Readme.txt
112249	Richard Harland	Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos	We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway.    	Richard Harland, Rachel Kjolby	Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos	0	57686	SRP136318	ets2 WE + ets2-FLAG - NF11.5	ChIP-Seq	NF11.5	embryo		GSM3062917,GSM3062918	ChIP-Seq/Transcription Factor/Ets2	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Readme.txt
112249	Richard Harland	Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos	We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway.    	Richard Harland, Rachel Kjolby	Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos	0	57686	SRP136318	ets2 WE + ets2-FLAG - NF11.5	ChIP-Seq	NF11.5	embryo		GSM3062917,GSM3062918	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Readme.txt
112249	Richard Harland	Genome-wide map of ETS2 binding in gastrula stage Xenopus.laevis embryos	We examined the location of ETS2 biding in gastrula stage Xenopus embryos to identify direct transcriptional targets of the FGF signaling pathway.    	Richard Harland, Rachel Kjolby	Examination of tripple-FLAG tagged ETS2 binding in whole Xenopus embryos	0	57686	SRP136318	input WE + ets2-FLAG - NF11.5	ChIP-Seq	NF11.5	embryo		GSM3062919,GSM3062920	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112249/XENLA_10.1/ChIP-Seq/Readme.txt
112364	Chris Kintner	RNAseq profiliing of Xenopus laevis animal caps expressing Xnr2 at st14	To determine if Xnr2 induces mesodermal genes expression in ectodermal tissues                                                                        	Chris Kintner, Yuan-Hung Chien	We force the ectodermal tissues to express xnr2 by injecting xnr2 RNA at the 2-4cell stage. The animal caps were excised at st10, the blastula stage. Tissues are cultured at DFA and harvested at stage 14 for RNA extraction.	29738711	54874	SRP136530	animal cap + nodal2 - NF14	RNA-Seq	NF14	animal cap	Chien YH et al. (2018)	GSM3068398,GSM3068399	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Readme.txt
112364	Chris Kintner	RNAseq profiliing of Xenopus laevis animal caps expressing Xnr2 at st14	To determine if Xnr2 induces mesodermal genes expression in ectodermal tissues                                                                        	Chris Kintner, Yuan-Hung Chien	We force the ectodermal tissues to express xnr2 by injecting xnr2 RNA at the 2-4cell stage. The animal caps were excised at st10, the blastula stage. Tissues are cultured at DFA and harvested at stage 14 for RNA extraction.	29738711	54874	SRP136530	animal cap + nodal2 - NF14	RNA-Seq	NF14	animal cap	Chien YH et al. (2018)	GSM3068398,GSM3068399	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112364/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 + Retinoic acid + CHX - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082049,GSM3082050	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 + Retinoic acid + CHX - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082049,GSM3082050	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 + Retinoic acid + CHX - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082049,GSM3082050	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 + Retinoic acid - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082047,GSM3082048	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 + Retinoic acid - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082047,GSM3082048	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 + Retinoic acid - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082047,GSM3082048	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + vegt + nog + cyp26a1 + CHX - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082045,GSM3082046	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + vegt + nog + cyp26a1 + CHX - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082045,GSM3082046	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + vegt + nog + cyp26a1 + CHX - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082045,GSM3082046	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082043,GSM3082044	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
112718	Gabriela Salinas-Riester	Retinoic acid induced expression of Hnf1β and Fzd4 is required for pancreas development in Xenopus laevis	Retinoic acid (RA) is required for pancreas specification in Xenopus and other vertebrates. However, the gene network that is directly induced by RA-s	Gabriela Salinas-Riester, Tomas Pieler, Maja Gere, Claudia Pommerenke, Thomas Lingner	VegT/Noggin/Cyp26a1 programmed animal cap explants from Xenopus laevis, untreated and treated with RA/CHX and collected  2 hours after RA addition at the equivalent of gastrula stage 11; two replicates A and B for each condition	29769220	54918	SRP137258	animal cap explant + nog + vegt + cyp26a1 - NF12.5	RNA-Seq	NF12.5	animal cap	Gere-Becker MB et al. (2018)	GSM3082043,GSM3082044	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE112718/XENLA_10.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT (NG Cap-C)	Hi-C	NF8	embryo	Gentsch GE et al. (2019)	GSM3099522,GSM3099523,GSM3099524	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099588,GSM3099589,GSM3099590	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099588,GSM3099589,GSM3099590	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099582,GSM3099583,GSM3099584	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099582,GSM3099583,GSM3099584	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099585,GSM3099586,GSM3099587	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099585,GSM3099586,GSM3099587	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099534,GSM3099535,GSM3099536	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099534,GSM3099535,GSM3099536	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF11	ChIP-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3099456	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099531,GSM3099532,GSM3099533	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099531,GSM3099532,GSM3099533	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT naked (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099520,GSM3099521	Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099516,GSM3099517	Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099518,GSM3099519	Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099518,GSM3099519	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE +  pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (NG Cap-C)	Hi-C	NF8	embryo	Gentsch GE et al. (2019)	GSM3099525,GSM3099526,GSM3099527	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/Hi-C/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099600,GSM3099601,GSM3099602	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099600,GSM3099601,GSM3099602	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	H3K4me1 + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099496,GSM3099497	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	H3K4me1 + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099496,GSM3099497	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	H3K4me1 WE - NF8 MBT 	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099494,GSM3099495	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Myod1 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099476,GSM3099477	ChIP-Seq/Transcription Factor/Myod1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Myod1 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099476,GSM3099477	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099480,GSM3099481	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099480,GSM3099481	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099492,GSM3099493	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099492,GSM3099493	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099552,GSM3099553,GSM3099554	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099552,GSM3099553,GSM3099554	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099546,GSM3099547,GSM3099548	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099546,GSM3099547,GSM3099548	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099612,GSM3099613,GSM3099614	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099612,GSM3099613,GSM3099614	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099478,GSM3099479	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099478,GSM3099479	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099486,GSM3099487	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099488,GSM3099489	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099488,GSM3099489	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF6	ChIP-Seq	NF6	embryo	Gentsch GE et al. (2019)	GSM3099459	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099460	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF10 	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099461	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099528,GSM3099529,GSM3099530	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099528,GSM3099529,GSM3099530	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099579,GSM3099580,GSM3099581	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099579,GSM3099580,GSM3099581	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099573,GSM3099574,GSM3099575	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099573,GSM3099574,GSM3099575	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099576,GSM3099577,GSM3099578	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099576,GSM3099577,GSM3099578	RNA-Seq/Whole Embryo/Blastula NF7 to NF9		tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF12	ChIP-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3099457	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF13	ChIP-Seq	NF13	embryo	Gentsch GE et al. (2019)	GSM3099458	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF6	ChIP-Seq	NF6	embryo	Gentsch GE et al. (2019)	GSM3099452	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF7	ChIP-Seq	NF7	embryo	Gentsch GE et al. (2019)	GSM3099453	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099597,GSM3099598,GSM3099599	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099597,GSM3099598,GSM3099599	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099591,GSM3099592,GSM3099593	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099591,GSM3099592,GSM3099593	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099594,GSM3099595,GSM3099596	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099594,GSM3099595,GSM3099596	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099454	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099455,GSM3099490,GSM3099491	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	phospho-smad1/5/9 WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099463,GSM3099464	ChIP-Seq/Transcription Factor/phospho-Smad1_5_9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	phospho-smad1/5/9 WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099462	ChIP-Seq/Transcription Factor/phospho-Smad1_5_9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099466	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099482,GSM3099483	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099465	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099484,GSM3099485	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099484,GSM3099485	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099468	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE - NF12	ChIP-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3099469	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 tail bud - NF20	ChIP-Seq	NF20	tail bud	Gentsch GE et al. (2019)	GSM3099472	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 head - NF20	ChIP-Seq	NF20	head	Gentsch GE et al. (2019)	GSM3099470	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 trunk - NF20	ChIP-Seq	NF20	trunk	Gentsch GE et al. (2019)	GSM3099471	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099467	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Tbx6 WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2019)	GSM3099475	ChIP-Seq/Transcription Factor/Tbx6	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	VegT WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099474	ChIP-Seq/Transcription Factor/vegt	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	VegT WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099473	ChIP-Seq/Transcription Factor/vegt	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099549,GSM3099550,GSM3099551	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099549,GSM3099550,GSM3099551	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099505,GSM3099506,GSM3099507	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF11	ChIP-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3099508	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF12	ChIP-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3099509,GSM3099510	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF13	ChIP-Seq	NF13	embryo	Gentsch GE et al. (2019)	GSM3099511	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2019)	GSM3099512	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input tail bud - NF20	ChIP-Seq	NF20	tail bud	Gentsch GE et al. (2019)	GSM3099515	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input head - NF20	ChIP-Seq	NF20	head	Gentsch GE et al. (2019)	GSM3099513	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input trunk - NF20	ChIP-Seq	NF20	trunk	Gentsch GE et al. (2019)	GSM3099514	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF6	ChIP-Seq	NF6	embryo	Gentsch GE et al. (2019)	GSM3099498	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF7	ChIP-Seq	NF7	embryo	Gentsch GE et al. (2019)	GSM3099499	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099500,GSM3099501	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099502,GSM3099503	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099504	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099606,GSM3099607,GSM3099608	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099606,GSM3099607,GSM3099608	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099603,GSM3099604,GSM3099605	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099603,GSM3099604,GSM3099605	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099615,GSM3099616,GSM3099617	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099615,GSM3099616,GSM3099617	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099609,GSM3099610,GSM3099611	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099609,GSM3099610,GSM3099611	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099633,GSM3099634,GSM3099635	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099633,GSM3099634,GSM3099635	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099627,GSM3099628,GSM3099629	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099627,GSM3099628,GSM3099629	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099630,GSM3099631,GSM3099632	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099630,GSM3099631,GSM3099632	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099543,GSM3099544,GSM3099545	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099561,GSM3099562,GSM3099563	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099561,GSM3099562,GSM3099563	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099555,GSM3099556,GSM3099557	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099555,GSM3099556,GSM3099557	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099558,GSM3099559,GSM3099560	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099558,GSM3099559,GSM3099560	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099642,GSM3099643,GSM3099644	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099642,GSM3099643,GSM3099644	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099636,GSM3099637,GSM3099638	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099636,GSM3099637,GSM3099638	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099639,GSM3099640,GSM3099641	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099639,GSM3099640,GSM3099641	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099537,GSM3099538,GSM3099539	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099540,GSM3099541,GSM3099542	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099570,GSM3099571,GSM3099572	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099564,GSM3099565,GSM3099566	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099567,GSM3099568,GSM3099569	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099624,GSM3099625,GSM3099626	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099618,GSM3099619,GSM3099620	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099621,GSM3099622,GSM3099623	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099651,GSM3099652,GSM3099653	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099645,GSM3099646,GSM3099647	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099648,GSM3099649,GSM3099650	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_10.0/RNA-Seq/Readme.txt
115220	Lei Li	Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq]	VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs	Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher	RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer.	30842454	55761	SRP149548	somite - NF22	RNA-Seq	NF22	somite	Li L et al. (2019)	GSM3171642,GSM3171643,GSM3171644	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Readme.txt
115220	Lei Li	Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq]	VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs	Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher	RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer.	30842454	55761	SRP149548	somite + etv6 MO - NF22	RNA-Seq	NF22	somite	Li L et al. (2019)	GSM3171645,GSM3171646,GSM3171647	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Readme.txt
115220	Lei Li	Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq]	VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs	Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher	RNA-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) or etv6 morpholino injected stage 22 embryos. Indexed libraries were then generated, pooled and sequenced using a NextSeq 500 sequencer.	30842454	55761	SRP149548	somite + etv6 MO - NF22	RNA-Seq	NF22	somite	Li L et al. (2019)	GSM3171645,GSM3171646,GSM3171647	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115220/XENLA_10.1/RNA-Seq/Readme.txt
115224	Lei Li	Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq]	VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs	Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher	Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer.	30842454	55761	SRP149552	input somite - NF22	ChIP-Seq	NF22	somite	Li L et al. (2019)	GSM3171683,GSM3171684,GSM3171685	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Readme.txt
115224	Lei Li	Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq]	VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downs	Lei Li, Rossella Rispoli, Roger Patient, Aldo Ciau-Uitz, Catherine Porcher	Etv6 ChIP-seq was performed on three independent biological samples obtained from the somites of wild-type (WT) stage 22 embryos. Indexed libraries were then generated from immunoprecipited DNA and control input samples, pooled and sequenced using a NextSeq 500 sequencer.	30842454	55761	SRP149552	Etv6 somite - NF22	ChIP-Seq	NF22	somite	Li L et al. (2019)	GSM3171680,GSM3171681,GSM3171682	ChIP-Seq/Transcription Factor/Etv6	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE115224/XENLA_10.1/ChIP-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF24 0_mpw	RNA-Seq	NF24	embryo	Abaffy P et al. (2019)	GSM3245092,GSM3245093,GSM3245094	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF24 0_mpw	RNA-Seq	NF24	embryo	Abaffy P et al. (2019)	GSM3245092,GSM3245093,GSM3245094	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF24 30_mpw	RNA-Seq	NF24	embryo	Abaffy P et al. (2019)	GSM3245095,GSM3245096,GSM3245097	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF24 30_mpw	RNA-Seq	NF24	embryo	Abaffy P et al. (2019)	GSM3245095,GSM3245096,GSM3245097	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF25 60_mpw	RNA-Seq	NF25	embryo	Abaffy P et al. (2019)	GSM3245098,GSM3245099,GSM3245100	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF25 60_mpw	RNA-Seq	NF25	embryo	Abaffy P et al. (2019)	GSM3245098,GSM3245099,GSM3245100	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF26 90_mpw	RNA-Seq	NF26	embryo	Abaffy P et al. (2019)	GSM3245101,GSM3245102,GSM3245103	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116667	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing.                                                       	Radek Šindelka, Pavel Abaffy, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of wounded tissue were collected from each replicate.	31694542	56449	SRP152312	WE + epidermis amputation - NF26 90_mpw	RNA-Seq	NF26	embryo	Abaffy P et al. (2019)	GSM3245101,GSM3245102,GSM3245103	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116667/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258297,GSM3258298	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258297,GSM3258298	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258297,GSM3258298	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258299,GSM3258300	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258299,GSM3258300	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258299,GSM3258300	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258301,GSM3258302	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258301,GSM3258302	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258301,GSM3258302	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258303,GSM3258304	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258303,GSM3258304	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258303,GSM3258304	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258305,GSM3258306	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258305,GSM3258306	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258305,GSM3258306	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + TRIM + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258305,GSM3258306	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258307,GSM3258308	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258307,GSM3258308	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258307,GSM3258308	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258307,GSM3258308	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258309,GSM3258310	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258309,GSM3258310	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258309,GSM3258310	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258309,GSM3258310	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw  + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258311,GSM3258312	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw  + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258311,GSM3258312	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw  + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258311,GSM3258312	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw  + TRIM + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258311,GSM3258312	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258313,GSM3258314	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258313,GSM3258314	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258313,GSM3258314	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 0 mpw + nos3 MO + nos1 MO + epidermis ablation - NF24	RNA-Seq	NF24	epidermis	Abaffy P et al. (2019)	GSM3258313,GSM3258314	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258315,GSM3258316	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258315,GSM3258316	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258315,GSM3258316	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 30 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258315,GSM3258316	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258317,GSM3258318	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258317,GSM3258318	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258317,GSM3258318	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 60 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258317,GSM3258318	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258319,GSM3258320	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258319,GSM3258320	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258319,GSM3258320	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116678	Radek Šindelka	Gene expression during embryonic wound healing of Xenopus laevis after inhibition of production of NO.	We analyzed the gene expression profile during the first 90 minutes of embryonic wound healing and compared it with embryos with a chronic problem wit	Radek Šindelka, Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Radek Sindelka	Embryos at stages 24-26 were injured using forceps (at middle ventral side) and five pieces of the wounded tissue were collected from each replicate.	31694542	56449	SRP152311	Wounded tissue 90 mpw + nos3 MO + nos1 MO + epidermis ablation - NF25	RNA-Seq	NF25	epidermis	Abaffy P et al. (2019)	GSM3258319,GSM3258320	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116678/XENLA_10.1/RNA-Seq/Readme.txt
116819	Stacey Wahl	Transcriptome analysis of wild type and RAR deficient frog faces during development	We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453.	Stacey Wahl, Stephen Turner, Amanda Dickinson	Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed.	30390632	55440	SRP152872	intercanthal region - NF40	RNA-Seq	NF40		Wahl SE et al. (2018)	GSM3262255,GSM3262256,GSM3262257	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Readme.txt
116819	Stacey Wahl	Transcriptome analysis of wild type and RAR deficient frog faces during development	We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453.	Stacey Wahl, Stephen Turner, Amanda Dickinson	Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed.	30390632	55440	SRP152872	intercanthal region + BMS453 - NF40	RNA-Seq	NF40		Wahl SE et al. (2018)	GSM3262258,GSM3262259,GSM3262260	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Readme.txt
116819	Stacey Wahl	Transcriptome analysis of wild type and RAR deficient frog faces during development	We utilized RNASeq to investigate the changes in mRNA expression when retinoic acid signaling is inhibited by treatment with an RAR inhibitor, BMS453.	Stacey Wahl, Stephen Turner, Amanda Dickinson	Embryos were treated with RAR inhibtior during the latter stage of facial development, 35-66 hours post fertilzation, facial region was dissection and global changes in gene expression were assessed. Further analyses to determine funcitonal networks that were affected was performed.	30390632	55440	SRP152872	intercanthal region + BMS453 - NF40	RNA-Seq	NF40		Wahl SE et al. (2018)	GSM3262258,GSM3262259,GSM3262260	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE116819/XENLA_10.1/RNA-Seq/Readme.txt
117754	Taejoon Kwon	Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis	The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone 	Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee	Collect mRNA from whole embryos; two biological replicates were analyzed	30522514	55525	SRP155436	WE - NF32	RNA-Seq	NF32	embryo	Kim Y et al. (2018)	GSM3308290,GSM3308291	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt
117754	Taejoon Kwon	Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis	The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone 	Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee	Collect mRNA from whole embryos; two biological replicates were analyzed	30522514	55525	SRP155436	WE + kdm5c MO - NF32	RNA-Seq	NF32	embryo	Kim Y et al. (2018)	GSM3308292,GSM3308293	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt
117754	Taejoon Kwon	Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis	The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone 	Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee	Collect mRNA from whole embryos; two biological replicates were analyzed	30522514	55525	SRP155436	WE + kdm5c MO - NF32	RNA-Seq	NF32	embryo	Kim Y et al. (2018)	GSM3308292,GSM3308293	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt
117754	Taejoon Kwon	Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis	The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone 	Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee	Collect mRNA from whole embryos; two biological replicates were analyzed	30522514	55525	SRP155436	WE + kdm3a MO - NF32	RNA-Seq	NF32	embryo	Kim Y et al. (2018)	GSM3308294,GSM3308295	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt
117754	Taejoon Kwon	Critical roles of lysine demethylase Kdm3a in craniofacial and neural development during Xenopus embryogenesis	The epigenetic modifier lysine-specific histone demethylase 3a (kdm3a) is specific for demethylation of mono- and di-methylated 9th lysine of histone 	Taejoon Kwon, Hyun-Kyung Lee, Tayaba Ismail, Chowon Kim, Youni Kim, Jeen-Woo Park, Oh-Shin Kwon, Beom-Sik Kang, Dong-Seok Lee, Tae Park, Hyun-Shik Lee	Collect mRNA from whole embryos; two biological replicates were analyzed	30522514	55525	SRP155436	WE + kdm3a MO - NF32	RNA-Seq	NF32	embryo	Kim Y et al. (2018)	GSM3308294,GSM3308295	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE117754/XENLA_10.1/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal blastomere - NF4	RNA-Seq	NF4	animal blastomere	Paraiso KD et al. (2019)	GSM3317414,GSM3317415,GSM3317416	RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal blastomere - NF4	RNA-Seq	NF4	vegetal blastomere	Paraiso KD et al. (2019)	GSM3317417,GSM3317418,GSM3317419	RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	WE - NF4	RNA-Seq	NF4	embryo	Paraiso KD et al. (2019)	GSM3317420,GSM3317421,GSM3317422	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317423,GSM3317431	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317425,GSM3317433	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317425,GSM3317433	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317424,GSM3317432	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317424,GSM3317432	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5		tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317426,GSM3317434	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317426,GSM3317434	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317427,GSM3317435	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317427,GSM3317435	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + otx1 + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317428,GSM3317436	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + otx1 + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317428,GSM3317436	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - otx1 + vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317429,GSM3317437	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - otx1 + vegt + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317429,GSM3317437	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + otx1 + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317430,GSM3317438	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	animal cap - vegt + otx1 + animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Paraiso KD et al. (2019)	GSM3317430,GSM3317438	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317439,GSM3317443	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317439,GSM3317443	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegt MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317440,GSM3317444	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegt MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317440,GSM3317444	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegt MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317440,GSM3317444	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - otx1 MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317441,GSM3317445	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - otx1 MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317441,GSM3317445	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - otx1 MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317441,GSM3317445	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegt MO + otx1 MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317442,GSM3317446	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegt MO + otx1 MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317442,GSM3317446	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	vegetal yolk mass - vegt MO + otx1 MO + vegetal yolk mass explant - NF10.5	RNA-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3317442,GSM3317446	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/RNA-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	H3K4me1 vegetal yolk mass - NF10.5	ChIP-Seq	NF10.5	vegetal yolk mass	Paraiso KD et al. (2019)	GSM3638163,GSM3638164	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	VegT WE - NF8	ChIP-Seq	NF8	embryo	Paraiso KD et al. (2019)	GSM3317447,GSM3317448	ChIP-Seq/Transcription Factor/VegT	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Readme.txt
118024	Kitt Paraiso	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	We examined the combinatorial function of the Xenopus tropicalis maternal transcription factors Foxh1, Vegt and Otx1. The study involved combinatorial	Kitt Paraiso, Kitt Paraiso, Ken Cho	Screen for animally and vegetally expressed transcription factors: In biological triplicates, the animal and vegetal blastomeres of 8-cell stage embryos were separated. Subsequently, RNA was harvested from both set of blastomeres and whole embryos at the same stage and prepared for RNA sequencing. Combinatorial ectopic expression experiment: In biological duplicates, titrating levels of vegt and otx1 RNA were combinatorially microinjected into 1-cell stage embryos. Animal caps (putative ectoderm) were microdissected at stage 9 (6 hpf) from uninjected and injected samples, and RNA was harvested at stage 10.5 (7 hpf) for RNA sequencing. Double morpholino experiment: In biological duplicates, Vegt and Otx1 morpholinos were injected in 1-cell stage embryos independently or together. Vegetal masses (putative endoderm) were microdissected at stage 9 (6 hpf) and RNA was harvested from uninjected and injected samples at stage 10.5 (7 hpf) for RNA sequencing. Vegt and Otx1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 8 (prior to zygotic gene activation) and fixed with formaldehyde in biological duplicates. Chromatin immunoprecipitation as performed using anti-Vegt or anti-Otx1 antibody and DNA was purified for sequencing. H3K4me1 ChIP-seq analysis: Developmentally synchronized embryos were harvested at stage 10.5 and fixed with formaldehyde in biological duplicates. The vegetal tissue was disssected from the fixed embryos, and ChIP-seq was performed using anti-H3K4me1 antibody.

Previously published Foxh1 ChIP-seq from GSE85273 was re-analyzed along with this study.

GSM2263590 and GSM2263598 used to generate:
GSE118024_foxh1_IDR_optimal_peaks.bed.gz

GSM2263598 used to generate:
GSE118024_otx1_IDR_optimal_peaks.bed.gz, GSE118024_vegt_IDR_optimal_peaks.bed.gz	31167141	55999	SRP156130	Otx1 WE - NF8	ChIP-Seq	NF8	embryo	Paraiso KD et al. (2019)	GSM3317449,GSM3317450	ChIP-Seq/Transcription Factor/Otx1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118024/XENTR_10.0/ChIP-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + hindlimb amputation - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330455,GSM3330456,GSM3330457	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + hindlimb amputation - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330455,GSM3330456,GSM3330457	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + hindlimb amputation + sham - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330437,GSM3330438,GSM3330439	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + hindlimb amputation + sham - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330437,GSM3330438,GSM3330439	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + hindlimb amputation + sham - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330437,GSM3330438,GSM3330439	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330446,GSM3330447,GSM3330448	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330446,GSM3330447,GSM3330448	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330446,GSM3330447,GSM3330448	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	blastema + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	blastema	Herrera-Rincon C et al. (2018)	GSM3330446,GSM3330447,GSM3330448	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + hindlimb amputation + sham - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330440,GSM3330441,GSM3330442	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + hindlimb amputation + sham - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330440,GSM3330441,GSM3330442	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + hindlimb amputation + sham - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330440,GSM3330441,GSM3330442	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + hindlimb amputation - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330458,GSM3330459,GSM3330460	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + hindlimb amputation - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330458,GSM3330459,GSM3330460	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + hindlimb amputation - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330458,GSM3330459,GSM3330460	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330449,GSM3330450,GSM3330451	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330449,GSM3330450,GSM3330451	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330449,GSM3330450,GSM3330451	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	brain + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	brain	Herrera-Rincon C et al. (2018)	GSM3330449,GSM3330450,GSM3330451	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + hindlimb amputation - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330461,GSM3330462,GSM3330463	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + hindlimb amputation - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330461,GSM3330462,GSM3330463	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + hindlimb amputation - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330461,GSM3330462,GSM3330463	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + hindlimb amputation + sham - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330443,GSM3330444,GSM3330445	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + hindlimb amputation + sham - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330443,GSM3330444,GSM3330445	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + hindlimb amputation + sham - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330443,GSM3330444,GSM3330445	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330452,GSM3330453,GSM3330454	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330452,GSM3330453,GSM3330454	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330452,GSM3330453,GSM3330454	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
118454	Christopher Martyniuk	Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb	The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characte	Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin	Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)	30404012	55432	SRP157614	regenerating hindlimb + progesterone + hindlimb amputation - adult	RNA-Seq	adult 	regenerating hindlim	Herrera-Rincon C et al. (2018)	GSM3330452,GSM3330453,GSM3330454	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE118454/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + AGN193109 - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358737,GSM3358739,GSM3358741,GSM3358743	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + AGN193109 - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358737,GSM3358739,GSM3358741,GSM3358743	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + TTNPB - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358745,GSM3358747,GSM3358749,GSM3358751	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + TTNPB - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358745,GSM3358747,GSM3358749,GSM3358751	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WE + EtOH - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358753,GSM3358755,GSM3358757,GSM3358759	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WE + EtOH - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358753,GSM3358755,GSM3358757,GSM3358759	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + AGN193109 - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358738,GSM3358740,GSM3358742,GSM3358744	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + AGN193109 - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358738,GSM3358740,GSM3358742,GSM3358744	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + TTNPB - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358746,GSM3358748,GSM3358750,GSM3358752	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + TTNPB - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358746,GSM3358748,GSM3358750,GSM3358752	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + EtOH - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358754,GSM3358756,GSM3358758,GSM3358760	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + EtOH - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358754,GSM3358756,GSM3358758,GSM3358760	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381791,GSM3381792	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381791,GSM3381792	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381791,GSM3381792	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + E. coli UTI89 - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381793,GSM3381794	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + E. coli UTI89 - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381793,GSM3381794	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + E. coli UTI89 - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381793,GSM3381794	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + brain ablation - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381795,GSM3381796	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + brain ablation - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381795,GSM3381796	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + brain ablation - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381795,GSM3381796	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + brain ablation + E. coli UTI89 - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381797,GSM3381798	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + brain ablation + E. coli UTI89 - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381797,GSM3381798	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
119729	Christopher Martyniuk	An in-vivo brain-bacteria interface in the Xenopus brainless model reveals developmental brain as a key element of innate immunity	Over the past few years, interest in the field of neuroimmunology has expanded dramatically.  While recent data and hypotheses suggest immunity as the	Christopher Martyniuk, Celia Herrera-Rincon, Jean Pare, Christopher Martyniuk, Christina Harrison, Alina Fischer, Mike Levin	There were two biological replicates per treatment (brain intact, not infected; brain intact infected; brainless, not infected; brainless, infected).	32047653	56679	SRP160998	WE + brain ablation + E. coli UTI89 - NF48	RNA-Seq	NF48	embryo	Herrera-Rincon C et al. (2020)	GSM3381797,GSM3381798	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119729/XENLA_10.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE - NF8	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3473720	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473721	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	Input WE - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473723	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	Input WE - NF8	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3473722	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473748,GSM3473749,GSM3473750,GSM3473751	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473748,GSM3473749,GSM3473750,GSM3473751	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473752,GSM3473753,GSM3473754,GSM3473755	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473752,GSM3473753,GSM3473754,GSM3473755	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473756,GSM3473757,GSM3473758,GSM3473759	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473756,GSM3473757,GSM3473758,GSM3473759	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473742,GSM3473743,GSM3473744	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473742,GSM3473743,GSM3473744	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473745,GSM3473746,GSM3473747	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473745,GSM3473746,GSM3473747	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473739,GSM3473740,GSM3473741	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473739,GSM3473740,GSM3473741	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473768,GSM3473769,GSM3473770,GSM3473771	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473768,GSM3473769,GSM3473770,GSM3473771	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473764,GSM3473765,GSM3473766,GSM3473767	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473764,GSM3473765,GSM3473766,GSM3473767	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473760,GSM3473761,GSM3473762,GSM3473763	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473760,GSM3473761,GSM3473762,GSM3473763	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473724,GSM3473725,GSM3473726	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473724,GSM3473725,GSM3473726	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473736,GSM3473737,GSM3473738	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + SB431542 - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473727,GSM3473728,GSM3473729	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + SB431542 - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473727,GSM3473728,GSM3473729	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + SB431542 - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473727,GSM3473728,GSM3473729	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473730,GSM3473731,GSM3473732	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473730,GSM3473731,GSM3473732	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473730,GSM3473731,GSM3473732	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473733,GSM3473734,GSM3473735	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473733,GSM3473734,GSM3473735	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473733,GSM3473734,GSM3473735	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_10.0/RNA-Seq/Readme.txt
124168	Cei Abreu-Goodger	Axonal precursor miRNAs hitchhike on endosomes and locally regulate the development of neural circuits	Various species of non-coding RNAs (ncRNAs) are enriched in subcellular compartments but the mechanisms orchestrating their localization and their loc	Cei Abreu-Goodger, Eloina Corradi, Irene Dalla Costa, Antoneta Gavoci, Archana Iyer, Michela Roccuzzo, Tegan Otto, Eleonora Oliani, Simone Bridi, Stephanie Strohbuecker, Gabriela Santos-Rodriguez, Donatella Valdembri, Guido Serini, Marie-Laure Baudet	Total RNA profile were obtained from isolated retinal ganglion cell axons from Xenopus laevis retinal eye cultures using RNA-sequencing	32073171	57123	SRP174009	retinal ganglion cell axon - eye explant - NF35/36-39	RNA-Seq	NF35/36	retinal ganglion cel	Corradi E et al. (2020)	GSM3523319	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Readme.txt
124168	Cei Abreu-Goodger	Axonal precursor miRNAs hitchhike on endosomes and locally regulate the development of neural circuits	Various species of non-coding RNAs (ncRNAs) are enriched in subcellular compartments but the mechanisms orchestrating their localization and their loc	Cei Abreu-Goodger, Eloina Corradi, Irene Dalla Costa, Antoneta Gavoci, Archana Iyer, Michela Roccuzzo, Tegan Otto, Eleonora Oliani, Simone Bridi, Stephanie Strohbuecker, Gabriela Santos-Rodriguez, Donatella Valdembri, Guido Serini, Marie-Laure Baudet	Total RNA profile were obtained from isolated retinal ganglion cell axons from Xenopus laevis retinal eye cultures using RNA-sequencing	32073171	57123	SRP174009	retinal ganglion cell axon - eye explant - NF35/36-39	RNA-Seq	NF35/36	retinal ganglion cel	Corradi E et al. (2020)	GSM3523319	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124168/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	WE - NF10.5	RNA-Seq	NF10.5	embryo	Sosa EA et al. (2019)	GSM3536579,GSM3536584,GSM3536589	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	WE - NF12	RNA-Seq	NF12	embryo	Sosa EA et al. (2019)	GSM3536594,GSM3536599,GSM3536604	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	dorsal explant - NF12	RNA-Seq	NF12	dorsal	Sosa EA et al. (2019)	GSM3536597,GSM3536602,GSM3536607	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	dorsal explant - NF12	RNA-Seq	NF12	dorsal	Sosa EA et al. (2019)	GSM3536597,GSM3536602,GSM3536607	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	dorsal explant - NF10.5	RNA-Seq	NF10.5	dorsal	Sosa EA et al. (2019)	GSM3536582,GSM3536587,GSM3536592	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	dorsal explant - NF10.5	RNA-Seq	NF10.5	dorsal	Sosa EA et al. (2019)	GSM3536582,GSM3536587,GSM3536592	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	ventral explant - NF10.5	RNA-Seq	NF10.5	ventral	Sosa EA et al. (2019)	GSM3536583,GSM3536588,GSM3536593	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	ventral explant - NF10.5	RNA-Seq	NF10.5	ventral	Sosa EA et al. (2019)	GSM3536583,GSM3536588,GSM3536593	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	ventral explant - NF12	RNA-Seq	NF12	ventral	Sosa EA et al. (2019)	GSM3536598,GSM3536603,GSM3536608	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	ventral explant - NF12	RNA-Seq	NF12	ventral	Sosa EA et al. (2019)	GSM3536598,GSM3536603,GSM3536608	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	left side explant - NF12	RNA-Seq	NF12		Sosa EA et al. (2019)	GSM3536595,GSM3536600,GSM3536605	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	left side explant - NF12	RNA-Seq	NF12		Sosa EA et al. (2019)	GSM3536595,GSM3536600,GSM3536605	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	left side explant - NF10.5	RNA-Seq	NF10.5		Sosa EA et al. (2019)	GSM3536580,GSM3536585,GSM3536590	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	left side explant - NF10.5	RNA-Seq	NF10.5		Sosa EA et al. (2019)	GSM3536580,GSM3536585,GSM3536590	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	right side explant - NF10.5	RNA-Seq	NF10.5		Sosa EA et al. (2019)	GSM3536581,GSM3536586,GSM3536591	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	right side explant - NF10.5	RNA-Seq	NF10.5		Sosa EA et al. (2019)	GSM3536581,GSM3536586,GSM3536591	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	right side explant - NF12	RNA-Seq	NF12		Sosa EA et al. (2019)	GSM3536596,GSM3536601,GSM3536606	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
124563	Edward De Robertis	Transcriptome analysis of regeneration in Xenopus laevis twin embryos	Animal embryos have the remarkable property of self-organization. Over 125 years ago Hans Driesch separated the two blastomeres of sea urchin embryos 	Edward De Robertis, Yuki Moriyama, Eric Sosa, Yi Ding	A genome-wide study of genes that regulate regeneration of twin embryos in Xenopus laevis	31250914	56074	SRP175030	right side explant - NF12	RNA-Seq	NF12		Sosa EA et al. (2019)	GSM3536596,GSM3536601,GSM3536606	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE124563/XENLA_10.1/RNA-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587310	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587303,GSM3587304,GSM3587305	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587303,GSM3587304,GSM3587305	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587306,GSM3587307,GSM3587308	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587306,GSM3587307,GSM3587308	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587297,GSM3587298,GSM3587299	ChIP-Seq/Epigenetic/input	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587297,GSM3587298,GSM3587299	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587300,GSM3587301,GSM3587302	ChIP-Seq/Epigenetic/input	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587300,GSM3587301,GSM3587302	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587309	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587291,GSM3587292,GSM3587293	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587291,GSM3587292,GSM3587293	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587294,GSM3587295,GSM3587296	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587294,GSM3587295,GSM3587296	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 WE - NF7	ChIP-Seq	NF7	embryo	Oikawa M et al. (2020)	GSM3671368,GSM3671369	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587285,GSM3587286,GSM3587287	ChIP-Seq/Epigenetic/input	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587285,GSM3587286,GSM3587287	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587288,GSM3587289,GSM3587290	ChIP-Seq/Epigenetic/input	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587288,GSM3587289,GSM3587290	Manipulations/Protein	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input WE - NF7	ChIP-Seq	NF7	embryo	Oikawa M et al. (2020)	GSM3671366,GSM3671367	ChIP-Seq/Epigenetic/input	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587279,GSM3587280	ChIP-Seq/Epigenetic/input	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587283,GSM3587284	ChIP-Seq/Epigenetic/H3K27me3 	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587281,GSM3587282	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_10.1/ChIP-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589903,GSM3589918,GSM3589933	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589903,GSM3589918,GSM3589933	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589902,GSM3589917,GSM3589932	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589902,GSM3589917,GSM3589932	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589908,GSM3589923,GSM3589938	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589908,GSM3589923,GSM3589938	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589913,GSM3589928,GSM3589943	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589913,GSM3589928,GSM3589943	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589907,GSM3589922,GSM3589937	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589907,GSM3589922,GSM3589937	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589912,GSM3589927,GSM3589942	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589912,GSM3589927,GSM3589942	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589905,GSM3589920,GSM3589935	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589905,GSM3589920,GSM3589935	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589910,GSM3589925,GSM3589940	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589910,GSM3589925,GSM3589940	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589915,GSM3589930,GSM3589945	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + erfe MO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589915,GSM3589930,GSM3589945	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589904,GSM3589919,GSM3589934	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589904,GSM3589919,GSM3589934	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589909,GSM3589924,GSM3589939	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589909,GSM3589924,GSM3589939	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589914,GSM3589929,GSM3589944	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE + hbg1 cMO - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589914,GSM3589929,GSM3589944	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE - NF35/36	RNA-Seq	NF35/36	embryo	Melchert J et al. (2020)	GSM3589901,GSM3589916,GSM3589931	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE - NF37/38	RNA-Seq	NF37/38	embryo	Melchert J et al. (2020)	GSM3589906,GSM3589921,GSM3589936	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126058	Gabriela Salinas	Identification of genes regulated by Erythroferrone (ERFE)  in Xenopus embryos at tadpole stages.	RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages usi	Gabriela Salinas, Tomas Pieler, Juliane Melchert, Thomas Lingner	Xenopus eight-cell stage embryos were injected with 10 ng ERFE-MO1 or 20 ng ERFE-MO2 into the four vegetal blastomeres and cultivated until stage 35/36, stage 37/38 or stage 41.
Uninjected embryos as well as embryos injected with equal amounts of standard control morpholino (cMO) served as controls.	31846624	56559	SRP183483	WE - NF41	RNA-Seq	NF41	embryo	Melchert J et al. (2020)	GSM3589911,GSM3589926,GSM3589941	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126058/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + bap1 MO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609529,GSM3609532,GSM3609535	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + bap1 MO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609529,GSM3609532,GSM3609535	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + bap1 MO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609529,GSM3609532,GSM3609535	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + bap1 cMO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609528,GSM3609531,GSM3609534	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + bap1 cMO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609528,GSM3609531,GSM3609534	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + bap1 cMO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609528,GSM3609531,GSM3609534	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + hdac4 MO + bap1 MO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609530,GSM3609533,GSM3609536	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + hdac4 MO + bap1 MO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609530,GSM3609533,GSM3609536	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126597	Michael Durante	Bap1 loss leads to decreased expression of lineage specific commitment genes, and increased expression of pluripotency genes [RNA-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed gene expression at stage 12. 	Michael Durante, Jeffim Kuznetsov, Matthew Field, Michael Durante	RNA profiles of stage 12 embryos injected with either Ctrl morpholino (CtrlMO) or mopholino targeting Bap1 (Bap1MO), in triplicate, using Illumina Nextseq500.	31555735	56327	SRP185947	WE + hdac4 MO + bap1 MO - NF12	RNA-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609530,GSM3609533,GSM3609536	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126597/XENLA_10.1/RNA-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H2AK119ub WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609549,GSM3609550	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H2AK119ub WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609549,GSM3609550	ChIP-Seq/Epigenetic/H2AK119ub	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H2AK119ub WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609549,GSM3609550	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H2AK119ub WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609551,GSM3609552	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H2AK119ub WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609551,GSM3609552	ChIP-Seq/Epigenetic/H2AK119ub	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H2AK119ub WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609551,GSM3609552	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27AC WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609537,GSM3609538	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27AC WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609537,GSM3609538	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27AC WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609537,GSM3609538	ChIP-Seq/Epigenetic/H3K27ac	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27AC WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609539,GSM3609540	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27AC WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609539,GSM3609540	ChIP-Seq/Epigenetic/H3K27ac	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27AC WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609539,GSM3609540	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	input WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609553,GSM3609554	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	input WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609555,GSM3609556	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27me3 WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609545,GSM3609546	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27me3 WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609545,GSM3609546	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27me3 WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609545,GSM3609546	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27me3 WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609547,GSM3609548	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27me3 WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609547,GSM3609548	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K27me3 WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609547,GSM3609548	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K4me3 WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609541,GSM3609542	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K4me3 WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609541,GSM3609542	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K4me3 WE + bap1 MO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609541,GSM3609542	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K4me3 WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609543,GSM3609544	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K4me3 WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609543,GSM3609544	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
126598	Michael Durante	Loss of Bap1 leads to an increased global methylation and decrease in H3K27AC enhancer marks around key lineage commitment genes in Xenopus laevis embryos [ChIP-seq]	We performed morpholino-mediated knockdown of Bap1 protein expression in Xenopus laevis developing embryos, and analyzed inhibiting  and activating hi	Michael Durante, Jeffim Kuznetsov, Stefan Kurtenbach	Control and Bap1-depleted stage 12 frog embryos were analyzed by ChIP-seq for expression of H3K27AC, H3K27me3, H2Aub and H3K4me3 histone marks.	31555735	56327	SRP185948	H3K4me3 WE + bap1 cMO - NF12	ChIP-Seq	NF12	embryo	Kuznetsov JN et al. (2019)	GSM3609543,GSM3609544	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE126598/XENLA_10.1/ChIP-Seq/Readme.txt
127777	Rui Zhang	Whole transcriptome bisufilte sequencing for multiple species [Xenopus laevis]	We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species.                    	Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu	RNA BS-seq of mRNA for multiple species.	35513466	60263		WE - NF1	Bisulfite-Seq	NF1	embryo	Liu J et al. (2022)	GSM3638649,GSM3638650	None	laevis	XL101	XENLA_10.1	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Readme.txt
127777	Rui Zhang	Whole transcriptome bisufilte sequencing for multiple species [Xenopus laevis]	We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species.                    	Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu	RNA BS-seq of mRNA for multiple species.	35513466	60263		WE - NF25	Bisulfite-Seq	NF25	embryo	Liu J et al. (2022)	GSM3638651,GSM3638652	None	laevis	XL101	XENLA_10.1	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127777/XENLA_10.1/Bisulfite-Seq/Readme.txt
127778	Rui Zhang	Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis]	We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species.                    	Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu	RNA BS-seq of mRNA for multiple species.	35513466	60263		WE - NF1 5ng	Bisulfite-Seq	NF1	embryo	Liu J et al. (2022)	GSM3638655	None	tropicalis	XT100	XENTR_10.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt
127778	Rui Zhang	Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis]	We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species.                    	Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu	RNA BS-seq of mRNA for multiple species.	35513466	60263		WE - NF1 10ng	Bisulfite-Seq	NF1	embryo	Liu J et al. (2022)	GSM3638656	None	tropicalis	XT100	XENTR_10.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt
127778	Rui Zhang	Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis]	We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species.                    	Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu	RNA BS-seq of mRNA for multiple species.	35513466	60263		WE - NF1 20ng	Bisulfite-Seq	NF1	embryo	Liu J et al. (2022)	GSM3638657	None	tropicalis	XT100	XENTR_10.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt
127778	Rui Zhang	Whole transcriptome bisufilte sequencing for multiple species [Xenopus tropicalis]	We applied a robust experimental and computational framework to identify mRNA m5C sites with high specificity in multiple species.                    	Rui Zhang, Tao Huang, Tianxuan Zhao, Wanying Chen, Xueni Zhao, Jianheng Liu	RNA BS-seq of mRNA for multiple species.	35513466	60263		WE - NF1 100ng	Bisulfite-Seq	NF1	embryo	Liu J et al. (2022)	GSM3638653,GSM3638654	None	tropicalis	XT100	XENTR_10.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE127778/XENTR_10.0/Bisulfite-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head - NF45	RNA-Seq	NF45	head		GSM3684785,GSM3684786,GSM3684787	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head - NF45	RNA-Seq	NF45	head		GSM3684785,GSM3684786,GSM3684787	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head - NF47	RNA-Seq	NF47	head		GSM3684788,GSM3684789,GSM3684790	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head - NF47	RNA-Seq	NF47	head		GSM3684788,GSM3684789,GSM3684790	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head + Thioridazine - NF45	RNA-Seq	NF45	head		GSM3684791,GSM3684792,GSM3684793	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head + Thioridazine - NF45	RNA-Seq	NF45	head		GSM3684791,GSM3684792,GSM3684793	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head + Thioridazine - NF45	RNA-Seq	NF45	head		GSM3684791,GSM3684792,GSM3684793	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head + Thioridazine - NF47	RNA-Seq	NF47	head		GSM3684794,GSM3684795,GSM3684796	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head + Thioridazine - NF47	RNA-Seq	NF47	head		GSM3684794,GSM3684795,GSM3684796	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
128772	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced craniofacial abnormalities.	We found 101 differentially expressed genes between control and thioridazine samples at NF stage 45 and 135 at NF stage 47.                           	Kelly McLaughlin, Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-head tissue samples from thioridazine tadpoles with malformed craniofacial features and compared them to wild-type controls, at NF stage 45 and 47.	0	60262	SRP189302	head + Thioridazine - NF47	RNA-Seq	NF47	head		GSM3684794,GSM3684795,GSM3684796	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE128772/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain - NF45	RNA-Seq	NF45	brain	Pinet K et al. (2019)	GSM3703269,GSM3703270,GSM3703271	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain - NF45	RNA-Seq	NF45	brain	Pinet K et al. (2019)	GSM3703269,GSM3703270,GSM3703271	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain - NF47	RNA-Seq	NF47	brain	Pinet K et al. (2019)	GSM3703272,GSM3703273,GSM3703274	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain - NF47	RNA-Seq	NF47	brain	Pinet K et al. (2019)	GSM3703272,GSM3703273,GSM3703274	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain + Thioridazine - NF45	RNA-Seq	NF45	brain	Pinet K et al. (2019)	GSM3703275,GSM3703276,GSM3703277	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain + Thioridazine - NF45	RNA-Seq	NF45	brain	Pinet K et al. (2019)	GSM3703275,GSM3703276,GSM3703277	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain + Thioridazine - NF45	RNA-Seq	NF45	brain	Pinet K et al. (2019)	GSM3703275,GSM3703276,GSM3703277	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain + Thioridazine - NF47	RNA-Seq	NF47	brain	Pinet K et al. (2019)	GSM3703278,GSM3703279,GSM3703280	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain + Thioridazine - NF47	RNA-Seq	NF47	brain	Pinet K et al. (2019)	GSM3703278,GSM3703279,GSM3703280	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
129234	Kelly McLaughlin	Differential gene expression analysis between pre-metamorphic WT control X. laevis tadpoles and tadpoles with thioridazine-induced brain abnormalities.	Differential gene analysis between control and thioridazine brain cDNA libraries revealed 13 differentially expressed genes at stage 45 and 16 at stag	Kelly McLaughlin, Kaylinnette Pinet	We utilized whole-brain tissue samples from tadpoles exposed to thioridazine during neurulation and compared them to wild-type controls, at NF stage 45 and 47.	31253636	56072	SRP190205	brain + Thioridazine - NF47	RNA-Seq	NF47	brain	Pinet K et al. (2019)	GSM3703278,GSM3703279,GSM3703280	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE129234/XENLA_10.1/RNA-Seq/Readme.txt
130079	Emil Karaulanov	Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown	It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights 	Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs	Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo	31566562	56334	SRP193098	WE + hbg1 cMO - NF23	RNA-Seq	NF23	embryo	Han D et al. (2019)	GSM3731560,GSM3731561,GSM3731562	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt
130079	Emil Karaulanov	Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown	It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights 	Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs	Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo	31566562	56334	SRP193098	WE + hbg1 cMO - NF23	RNA-Seq	NF23	embryo	Han D et al. (2019)	GSM3731560,GSM3731561,GSM3731562	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt
130079	Emil Karaulanov	Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown	It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights 	Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs	Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo	31566562	56334	SRP193098	WE + hbg1 cMO - NF23	RNA-Seq	NF23	embryo	Han D et al. (2019)	GSM3731560,GSM3731561,GSM3731562	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt
130079	Emil Karaulanov	Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown	It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights 	Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs	Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo	31566562	56334	SRP193098	WE + neil2 MO - NF23	RNA-Seq	NF23	embryo	Han D et al. (2019)	GSM3731563,GSM3731564,GSM3731565	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt
130079	Emil Karaulanov	Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown	It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights 	Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs	Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo	31566562	56334	SRP193098	WE + neil2 MO - NF23	RNA-Seq	NF23	embryo	Han D et al. (2019)	GSM3731563,GSM3731564,GSM3731565	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt
130079	Emil Karaulanov	Gene expression changes in stage 23 Xenopus laevis embryos upon Neil2 knockdown	It was shown that neil2 is required for neural crest development in Xenopus (Schomacher et al. 2016; doi:10.1038/nsmb.3151). To gain further insights 	Emil Karaulanov, Dandan Han, Lars Schomacher, Katrin Schüle, Medhavi Mallick, Michael Musheev, Laura Krebs, Annika von Seggern, Christof Niehrs	Gene expression profiling by RNA-seq of stage 23 Xenopus laevis embryos injected with either control or neil2 Morpholino antisense oligo	31566562	56334	SRP193098	WE + neil2 MO - NF23	RNA-Seq	NF23	embryo	Han D et al. (2019)	GSM3731563,GSM3731564,GSM3731565	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130079/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Haas M et al. (2019)	GSM3738794,GSM3738800,GSM3738806	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap	Haas M et al. (2019)	GSM3738794,GSM3738800,GSM3738806	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF10.5	RNA-Seq	NF10.5	animal cap	Haas M et al. (2019)	GSM3738797,GSM3738803,GSM3738809	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF10.5	RNA-Seq	NF10.5	animal cap	Haas M et al. (2019)	GSM3738797,GSM3738803,GSM3738809	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF10.5	RNA-Seq	NF10.5	animal cap	Haas M et al. (2019)	GSM3738797,GSM3738803,GSM3738809	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF19	RNA-Seq	NF19	animal cap	Haas M et al. (2019)	GSM3738795,GSM3738807	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF19	RNA-Seq	NF19	animal cap	Haas M et al. (2019)	GSM3738795,GSM3738807	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF19	RNA-Seq	NF19	animal cap	Haas M et al. (2019)	GSM3738798,GSM3738810	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF19	RNA-Seq	NF19	animal cap	Haas M et al. (2019)	GSM3738798,GSM3738810	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF19	RNA-Seq	NF19	animal cap	Haas M et al. (2019)	GSM3738798,GSM3738810	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF25	RNA-Seq	NF25	animal cap	Haas M et al. (2019)	GSM3738796,GSM3738808	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF25	RNA-Seq	NF25	animal cap	Haas M et al. (2019)	GSM3738796,GSM3738808	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF25	RNA-Seq	NF25	animal cap	Haas M et al. (2019)	GSM3738799,GSM3738811	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF25	RNA-Seq	NF25	animal cap	Haas M et al. (2019)	GSM3738799,GSM3738811	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF25	RNA-Seq	NF25	animal cap	Haas M et al. (2019)	GSM3738799,GSM3738811	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF16	RNA-Seq	NF16	animal cap	Haas M et al. (2019)	GSM3738804	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF16	RNA-Seq	NF16	animal cap	Haas M et al. (2019)	GSM3738804	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF16	RNA-Seq	NF16	animal cap	Haas M et al. (2019)	GSM3738804	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF16	RNA-Seq	NF16	animal cap	Haas M et al. (2019)	GSM3738801	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF16	RNA-Seq	NF16	animal cap	Haas M et al. (2019)	GSM3738801	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF24	RNA-Seq	NF24	animal cap	Haas M et al. (2019)	GSM3738802	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant - NF24	RNA-Seq	NF24	animal cap	Haas M et al. (2019)	GSM3738802	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF24	RNA-Seq	NF24	animal cap	Haas M et al. (2019)	GSM3738805	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF24	RNA-Seq	NF24	animal cap	Haas M et al. (2019)	GSM3738805	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130448	Peter Walentek	Mucociliary epidermis RNA-seq data from comparison of controls and DN-tp63 morpholino knockdown in Xenopus animal cap explants.	This study was conducted to investigate the effects of DN-tp63 loss-of-function on mucociliary basal stem cells in Xenopus laevis. Uninjected control 	Peter Walentek	The experiment was conducted in three biological replicates (embryos were derived from three different females and fertilizations). Control samples remained uninjected, DN-tp63 morphant samples were injected with morpholino oligonucleotides targeting the start condon of DN-tp63 and resulted in protein knockdown (loss-of-function). Sequencing was performed in two seperate paired-end runs to increase sequencing dpth, with each run containing all samples.	31553905	56304	SRP194164	animal cap explant + tp63 MO - NF24	RNA-Seq	NF24	animal cap	Haas M et al. (2019)	GSM3738805	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130448/XENLA_10.1/RNA-Seq/Readme.txt
130816	Robert Denver	Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis	Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation	Robert Denver, Luan Wen	Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted.	31316462	56139	SRP198181	Xtr.thra{tmShiyb} - brain - NF54	RNA-Seq	NF54	brain	Wen L et al. (2019)	GSM3754703,GSM3754704,GSM3754705	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Readme.txt
130816	Robert Denver	Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis	Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation	Robert Denver, Luan Wen	Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted.	31316462	56139	SRP198181	Xtr.thra{tmShiyb} - brain + L-T3 - NF54	RNA-Seq	NF54	brain	Wen L et al. (2019)	GSM3754706,GSM3754707,GSM3754708	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENTR_10.0/RNA-Seq/Readme.txt
130816	Robert Denver	Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis	Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation	Robert Denver, Luan Wen	Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted.	31316462	56139	SRP198181	brain - NF54	RNA-Seq	NF54	brain	Wen L et al. (2019)	GSM3754697,GSM3754698,GSM3754699	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Readme.txt
130816	Robert Denver	Thyroid hormone receptor alpha is required for thyroid hormone-dependent neural cell proliferation during tadpole metamorphosis	Using tadpoles mutant for thyroid hormone receptor alpha (thra), we show that TRa is required for thyroid hormone (T3) induction of cell proliferation	Robert Denver, Luan Wen	Wild type and thra mutant tadpoles were treated with vehicle (DMSO) or T3 (5 nM) added to the aquarium water for 16 hr before sacrifice and tissue harvest. The region of the brain containing the preoptic area/hypothalamus/thalamus was microdissected, RNA isolated and RNA sequencing conducted.	31316462	56139	SRP198181	brain + L-T3 - NF54	RNA-Seq	NF54	brain	Wen L et al. (2019)	GSM3754700,GSM3754701,GSM3754702	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE130816/XENLA_10.1/RNA-Seq/Readme.txt
131962	Matthew Good	Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages	To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using 	Matthew Good, Hui Chen, Matthew Good	Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively	31211992	56041	SRP199866	WE - NF9	RNA-Seq	NF9	embryo	Chen H et al. (2019)	GSM3832851,GSM3832852	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Readme.txt
131962	Matthew Good	Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages	To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using 	Matthew Good, Hui Chen, Matthew Good	Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively	31211992	56041	SRP199866	WE + 5-EU - NF9	RNA-Seq	NF9	embryo	Chen H et al. (2019)	GSM3832849,GSM3832850	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF11	RNA-Seq	NF11	embryo	Robson A et al. (2019)	GSM3844822,GSM3844823,GSM3844824	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF11	RNA-Seq	NF11	embryo	Robson A et al. (2019)	GSM3844822,GSM3844823,GSM3844824	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE - NF11	RNA-Seq	NF11	embryo	Robson A et al. (2019)	GSM3844820,GSM3844821	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF11.5	RNA-Seq	NF11.5	embryo	Robson A et al. (2019)	GSM3844827,GSM3844828,GSM3844829	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF11.5	RNA-Seq	NF11.5	embryo	Robson A et al. (2019)	GSM3844827,GSM3844828,GSM3844829	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE - NF11.5	RNA-Seq	NF11.5	embryo	Robson A et al. (2019)	GSM3844825,GSM3844826	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE - NF12	RNA-Seq	NF12	embryo	Robson A et al. (2019)	GSM3844830,GSM3844831	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF12	RNA-Seq	NF12	embryo	Robson A et al. (2019)	GSM3844832,GSM3844833,GSM3844834	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF12	RNA-Seq	NF12	embryo	Robson A et al. (2019)	GSM3844832,GSM3844833,GSM3844834	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF13	RNA-Seq	NF13	embryo	Robson A et al. (2019)	GSM3844837,GSM3844838,GSM3844839	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF13	RNA-Seq	NF13	embryo	Robson A et al. (2019)	GSM3844837,GSM3844838,GSM3844839	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE - NF13	RNA-Seq	NF13	embryo	Robson A et al. (2019)	GSM3844835,GSM3844836	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE - NF13 late	RNA-Seq	NF13	embryo	Robson A et al. (2019)	GSM3844840,GSM3844841	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF13 late	RNA-Seq	NF13	embryo	Robson A et al. (2019)	GSM3844842,GSM3844843,GSM3844844	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
132116	Martina Brueckner	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq]	Genomic analyses of patients with congenital heart disease (CHD) have identified significant contribution from mutations affecting cilia genes and chr	Martina Brueckner, Mustafa Khokha	Xenopus embryo mRNA profiling in wt (in duplicate) and RNF20 morpholino (in triplicate) at 12 hpf, 13 hpf, 14 hpf, 15 hpf, and 16 hpf	31235600	56064	SRP200236	WE + rnf20 MO - NF13 late	RNA-Seq	NF13	embryo	Robson A et al. (2019)	GSM3844842,GSM3844843,GSM3844844	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE132116/XENLA_10.1/RNA-Seq/Readme.txt
133220	Henry Zhang	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis	Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression.                    	Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang	Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail.	31794731	56519	SRP211830	tail - NF60	RNA-Seq	NF60	tail	Nakajima K et al. (2020)	GSM3902518,GSM3902519,GSM3902520	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt
133220	Henry Zhang	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis	Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression.                    	Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang	Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail.	31794731	56519	SRP211830	tail - NF60	RNA-Seq	NF60	tail	Nakajima K et al. (2020)	GSM3902518,GSM3902519,GSM3902520	RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt
133220	Henry Zhang	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis	Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression.                    	Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang	Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail.	31794731	56519	SRP211830	tail - NF63	RNA-Seq	NF63	tail	Nakajima K et al. (2020)	GSM3902515,GSM3902516,GSM3902517	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt
133220	Henry Zhang	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis	Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression.                    	Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang	Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail.	31794731	56519	SRP211830	tail - NF63	RNA-Seq	NF63	tail	Nakajima K et al. (2020)	GSM3902515,GSM3902516,GSM3902517	RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt
133220	Henry Zhang	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis	Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression.                    	Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang	Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail.	31794731	56519	SRP211830	tail + notochord ablation - NF63	RNA-Seq	NF63	tail	Nakajima K et al. (2020)	GSM3902521,GSM3902522,GSM3902523	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt
133220	Henry Zhang	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Xenopus tropicalis Tail and Notochord During Metamorphosis	Our experiment revealed the notochord specific metamorphosis-induced genes to clarify the molecular mechanisms of tail regression.                    	Henry Zhang, Keisuke Nakajima, Yun-Bo Shi, Hongen Zhang	Compared tail before (St60) and during (St63) metamorphosis. Compared whole tail and notochord-removed-tail.	31794731	56519	SRP211830	tail + notochord ablation - NF63	RNA-Seq	NF63	tail	Nakajima K et al. (2020)	GSM3902521,GSM3902522,GSM3902523	RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE133220/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955645,GSM3955646,GSM3955647,GSM3955648	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955645,GSM3955646,GSM3955647,GSM3955648	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Benzo[a]pyrene - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955649,GSM3955650,GSM3955651,GSM3955652	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Benzo[a]pyrene - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955649,GSM3955650,GSM3955651,GSM3955652	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Benzo[a]pyrene - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955649,GSM3955650,GSM3955651,GSM3955652	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Benzo[a]pyrene + Triclosan - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955657,GSM3955658,GSM3955659,GSM3955660	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Benzo[a]pyrene + Triclosan - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955657,GSM3955658,GSM3955659,GSM3955660	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Benzo[a]pyrene + Triclosan - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955657,GSM3955658,GSM3955659,GSM3955660	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Triclosan - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955653,GSM3955654,GSM3955655,GSM3955656	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Triclosan - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955653,GSM3955654,GSM3955655,GSM3955656	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
134545	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in the response to chronic endocrine disruptor exposure in Xenopus tropicalis.	Xenopus tropicallis were exposed from seven-days-aged tadpoles to adult stage (one year) to benzo[a]pyrene, triclosan or a mixture of the two compound	Stéphane REYNAUD	PRJEB18463	31271984	56099	ERP020393	liver + Triclosan - adult	RNA-Seq	adult 	liver	Usal M et al. (2019)	GSM3955653,GSM3955654,GSM3955655,GSM3955656	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE134545/XENTR_10.0/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 day post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089660,GSM4089661,GSM4089662	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 day post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089660,GSM4089661,GSM4089662	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 1 week post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089663,GSM4089664,GSM4089665	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 1 week post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089663,GSM4089664,GSM4089665	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 week post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089666,GSM4089667,GSM4089668	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 week post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089666,GSM4089667,GSM4089668	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain 1 week post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089669,GSM4089670,GSM4089671	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain 3 week post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089672,GSM4089673,GSM4089674	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain 3 day post amp. - NF53	RNA-Seq	NF53	hindbrain	Belrose JL et al. (2020)	GSM4089657,GSM4089658,GSM4089659	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 day post amp. - juvenile	RNA-Seq	juvenile 	hindbrain	Belrose JL et al. (2020)	GSM4089678,GSM4089679,GSM4089680	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 day post amp. - juvenile	RNA-Seq	juvenile 	hindbrain	Belrose JL et al. (2020)	GSM4089678,GSM4089679,GSM4089680	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 1 week post amp.- juvenile	RNA-Seq	juvenile 	hindbrain	Belrose JL et al. (2020)	GSM4089681,GSM4089682,GSM4089683	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 1 week post amp.- juvenile	RNA-Seq	juvenile 	hindbrain	Belrose JL et al. (2020)	GSM4089681,GSM4089682,GSM4089683	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 week post amp. - juvenile	RNA-Seq	juvenile 	hindbrain	Belrose JL et al. (2020)	GSM4089684,GSM4089685,GSM4089686	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain + spinal cord amputation 3 week post amp. - juvenile	RNA-Seq	juvenile 	hindbrain	Belrose JL et al. (2020)	GSM4089684,GSM4089685,GSM4089686	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	hindbrain - juvenile	RNA-Seq	juvenile 	hindbrain	Belrose JL et al. (2020)	GSM4089675,GSM4089676,GSM4089677	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089687,GSM4089688,GSM4089689	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye + optic nerve amputation 3 day post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089690,GSM4089691,GSM4089692	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye + optic nerve amputation 3 day post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089690,GSM4089691,GSM4089692	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye 3 day post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089693,GSM4089694,GSM4089695	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye + optic nerve amputation 11 day post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089696,GSM4089697,GSM4089698	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye + optic nerve amputation 11 day post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089696,GSM4089697,GSM4089698	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye 11 day post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089699,GSM4089700,GSM4089701	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye + optic nerve amputation 3 week post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089702,GSM4089703,GSM4089704	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye + optic nerve amputation 3 week post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089702,GSM4089703,GSM4089704	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
137844	Ben Szaro	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Xenopus is uniquely suited for addressing the question of whether a core gene expression program for successful CNS axon regeneration exists, because 	Ben Szaro, Ben Szaro, Kurt Gibbs, Jamie Belrose	RNA-seq (30 million nominal reads per sample) was performed on 51 samples: operated juvenile frog eye and contralateral unoperated eye after optic nerve injury at three different timepoints (3 days, 11 days, 3 weeks), plus surgiically naïve frog eyes, with 6 pooled eyes for each sample; tadpole hindbrain after spinal cord transection plus age-matched unoperated controls at three timepoints (3 days, 7 days, 3 weeks), with 5 pooled hindbrains for each sample; juvenile frog hindbrain after spinal cord transection at 3 timepoints (3 days, 7 days, 3 weeks), plus unoperated hindbrain control, with 5 pooled hindbrains for each sample.	32758133	57252	SRP222957	eye 3 week post amp. - juvenile	RNA-Seq	juvenile 	eye	Belrose JL et al. (2020)	GSM4089705,GSM4089706,GSM4089707	RNA-Seq/Adult Tissues	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE137844/XENLA_10.1/RNA-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	tail - NF40	ATAC-Seq	NF40	tail		GSM4105018,GSM4105019	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	tail + tail amputation - NF40	ATAC-Seq	NF40	tail		GSM4105020,GSM4105021	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	regenerating tail + tail amputation - NF40 +2hpa	ATAC-Seq	NF40	regenerating tail		GSM4105024,GSM4105025	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	regenerating tail + tail amputation - NF40 +3hpa	ATAC-Seq	NF40	regenerating tail		GSM4105026,GSM4105027	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	regenerating tail + tail amputation - NF40 +6hpa	ATAC-Seq	NF40	regenerating tail		GSM4105028,GSM4105029	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	regenerating tail + tail amputation - NF40 +1hpa	ATAC-Seq	NF40	regenerating tail		GSM4105022,GSM4105023	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	regenerating tail + tail amputation - NF42	ATAC-Seq	NF42	regenerating tail		GSM4105030,GSM4105031	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	regenerating tail + tail amputation - NF43	ATAC-Seq	NF43	regenerating tail		GSM4105032,GSM4105033	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138303	Jessica Chang	ATAC-Seq of Xenopus tail regeneration	Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of 	Jessica Chang, Jessica Chang, Andrea Wills, Julie Baker	Profiling of chromatin accessibility across nine time points in tadpole tail regeneration; sequenced in duplicate via Illumina HiSeq and NextSeq.

Please note that each *combined_reps.bw file was generated from both replicates and is linked to the corresponding 'rep1' sample records.	0	57142	SRP223949	regenerating tail + tail amputation - NF47	ATAC-Seq	NF47	regenerating tail		GSM4105034,GSM4105035	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138303/XENTR_10.0/ATAC-Seq/Readme.txt
138905	Peter Klein	ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis	In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of	Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein	ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula).	0	56750	SRP225796	Animal cap - NF10	ATAC-Seq	NF10	animal cap	Esmaeili M et al. (2020)	GSM4121478,GSM4121479,GSM4121480	ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Readme.txt
138905	Peter Klein	ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis	In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of	Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein	ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula).	0	56750	SRP225796	Animal cap - NF12	ATAC-Seq	NF12	animal cap	Esmaeili M et al. (2020)	GSM4121481,GSM4121482,GSM4121483	ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_10.1/ATAC-Seq/Readme.txt
139267	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen	Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing.	32240642	56853	SRP226648	midbrain - NF50	MBD-Seq	NF50	midbrain	Kyono Y et al. (2020)	GSM4135836,GSM4135837,GSM4135838	MBD-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt
139267	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen	Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing.	32240642	56853	SRP226648	midbrain - NF56	MBD-Seq	NF56	midbrain	Kyono Y et al. (2020)	GSM4135839,GSM4135840,GSM4135841	MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt
139267	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen	Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing.	32240642	56853	SRP226648	midbrain - NF62	MBD-Seq	NF62	midbrain	Kyono Y et al. (2020)	GSM4135842,GSM4135843,GSM4135844	MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt
139267	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen	Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing.	32240642	56853	SRP226648	midbrain - NF66	MBD-Seq	NF66	midbrain	Kyono Y et al. (2020)	GSM4135845,GSM4135846,GSM4135847	MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt
139267	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen	Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing.	32240642	56853	SRP226648	input midbrain - NF50	MBD-Seq	NF50	midbrain	Kyono Y et al. (2020)	GSM4135833	MBD-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt
139267	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen	Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing.	32240642	56853	SRP226648	input midbrain - NF56	MBD-Seq	NF56	midbrain	Kyono Y et al. (2020)	GSM4135834	MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt
139267	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequen	Robert Denver, Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, conducted Methylated DNA Capture using the Diogenode kit, generated libraries and did deep sequencing.	32240642	56853	SRP226648	input midbrain - NF62	MBD-Seq	NF62	midbrain	Kyono Y et al. (2020)	GSM4135835	MBD-Seq/Embryonic Tissues/Tadpole NF55 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE139267/XENTR_10.0/MBD-Seq/Readme.txt
140120	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq]	Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta	Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing.	32240642	56853	SRP229123	midbrain - NF50	RNA-Seq	NF50	midbrain	Kyono Y et al. (2020)	GSM4154616,GSM4154617,GSM4154618	RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt
140120	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq]	Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta	Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing.	32240642	56853	SRP229123	midbrain - NF56	RNA-Seq	NF56	midbrain	Kyono Y et al. (2020)	GSM4154619,GSM4154620,GSM4154621	RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt
140120	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq]	Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta	Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing.	32240642	56853	SRP229123	midbrain - NF62	RNA-Seq	NF62	midbrain	Kyono Y et al. (2020)	GSM4154622,GSM4154623,GSM4154624	RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt
140120	Robert Denver	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [RNA-seq]	Changes in gene expression in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using RNAseq at four stages of meta	Robert Denver, Christopher Sifuentes, Yasuhiro Kyono, Samhitha Raj, Nicolas Buisine, Laurent Sachs	The middle brain region containing preoptic area/hypothalamus/thalamus was microdissected from Xenopus tropicalis tadpoles at four stages of metamorphosis: Nieuwkoop-Faber (NF) stage 50 (pre-metamorphosis), NF56 (pro-metamorphosis), NF62 (metamorphic climax), and NF66 (completion of metamorphosis). We isolated genomic DNA from tadpole brain to generate 3 biological replicates per developmental stage, isolated total RNA, generated libraries and did deep sequencing.	32240642	56853	SRP229123	midbrain - NF66	RNA-Seq	NF66	midbrain	Kyono Y et al. (2020)	GSM4154625,GSM4154626,GSM4154627	RNA-Seq/Embryonic Tissues/juvenile frog	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE140120/XENTR_10.0/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	marginal zone explant + pnhd MO - NF10.5	RNA-Seq	NF10.5	marginal zone	Ossipova O et al. (2020)	GSM4274732,GSM4274733	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	marginal zone explant + pnhd MO - NF10.5	RNA-Seq	NF10.5	marginal zone	Ossipova O et al. (2020)	GSM4274732,GSM4274733	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	marginal zone explant + pnhd MO - NF10.5	RNA-Seq	NF10.5	marginal zone	Ossipova O et al. (2020)	GSM4274732,GSM4274733	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	animal cap explant - NF11	RNA-Seq	NF11	animal cap	Ossipova O et al. (2020)	GSM4274730,GSM4274731	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	animal cap explant - NF11	RNA-Seq	NF11	animal cap	Ossipova O et al. (2020)	GSM4274730,GSM4274731	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	marginal zone explant - NF10.5	RNA-Seq	NF10.5	marginal zone	Ossipova O et al. (2020)	GSM4274726,GSM4274727	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	marginal zone explant - NF10.5	RNA-Seq	NF10.5	marginal zone	Ossipova O et al. (2020)	GSM4274726,GSM4274727	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	animal cap explant + pnhd-FLAG - NF11	RNA-Seq	NF11	animal cap	Ossipova O et al. (2020)	GSM4274728,GSM4274729	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	animal cap explant + pnhd-FLAG - NF11	RNA-Seq	NF11	animal cap	Ossipova O et al. (2020)	GSM4274728,GSM4274729	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
143795	Olga Ossipova	Specification of embryonic mesoderm by Pinhead signaling	Among the three embryonic germ layers, mesoderm plays a central role in the establishment of the vertebrate body plan.  Mesoderm is specified by secre	Olga Ossipova, Keiji Itoh, Aurelian Radu, Ezan Jerome, Sergei Sokol	Gain of function and loss of function study of Pinhead, a novel growth factor. Duplicate samples for control ectoderm explants (Cocaps1, Cocaps2) and Flag-Pinhead-expressing caps (FlagPin1, FlagPin2) at stage 11, gastrula were analyzed for Pinhead gain-of-function by RNAseq. For Pinhead loss-of-function, duplicate samples for control marginal zone explants (Co1, Co2) and Pinhead-depleted (Pinhead SpMo) marginal zone explants  (PhSpMo1, PhSpMo2) were studied at st.11 by RNAseq.	32859582	57304	SRP242211	animal cap explant + pnhd-FLAG - NF11	RNA-Seq	NF11	animal cap	Ossipova O et al. (2020)	GSM4274728,GSM4274729	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE143795/XENLA_10.1/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	WE - NF9	ATAC-Seq	NF9	embryo		GSM4322283,GSM4322284	ATAC-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	WE - NF10.5	ATAC-Seq	NF10.5	embryo		GSM4322285,GSM4322286	ATAC-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	WE - NF12	ATAC-Seq	NF12	embryo		GSM4322287,GSM4322288	ATAC-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	WE - NF16	ATAC-Seq	NF16	embryo		GSM4322289,GSM4322290	ATAC-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap - NF10.5	ATAC-Seq	NF10.5	animal cap		GSM4322291,GSM4322292	ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	dorsal marginal zone - NF10.5	ATAC-Seq	NF10.5	dorsal marginal zone		GSM4322293,GSM4322294	ATAC-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/ATAC-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - eomes - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322301,GSM4322302	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - eomes - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322301,GSM4322302	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - foxb1 + eomes - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322299,GSM4322300	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - foxb1 + eomes - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322299,GSM4322300	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - foxb1 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322297,GSM4322298	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - foxb1 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322297,GSM4322298	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - irx3 + otx2 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322305,GSM4322306	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - irx3 + otx2 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322305,GSM4322306	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - irx3 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322303,GSM4322304	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - irx3 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322303,GSM4322304	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - lhx8 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322309,GSM4322310	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - lhx8 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322309,GSM4322310	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - otx2 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322307,GSM4322308	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - otx2 - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322307,GSM4322308	Manipulations/mRNA Injection	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
145619	Ann Bright	Combinatorial action of transcription factors in open chromatin contributes to early cellular heterogeneity and organizer mesendoderm specification	We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mec	Ann Bright, Ann Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Gert Veenstra	ATAC-seq on Xenopus embryos (stage 9, 10.5, 12 and 16) and gastrula stage embryo explants (Animal cap and Dorsal marginal zone). RNA-seq on animal caps overexpressed with Foxb1, Foxb1 + Eomes, Eomes, Irx3, Irx3 + Otx2 and Lhx8 mRNA. ScRNA-seq on Animal cap and Dorsal marginal zone explants	0	57688	SRP250335	animal cap explant - NF10.5	RNA-Seq	NF10.5	animal cap		GSM4322295,GSM4322296	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE145619/XENTR_10.0/RNA-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF41	ATAC-Seq	NF41	whole organism	Kakebeen AD et al. (2020)	GSM4407623,GSM4407624	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF41	ATAC-Seq	NF41	whole organism	Kakebeen AD et al. (2020)	GSM4407623,GSM4407624	ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF45	ATAC-Seq	NF45	whole organism	Kakebeen AD et al. (2020)	GSM4407628,GSM4407629,GSM4407630	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF45	ATAC-Seq	NF45	whole organism	Kakebeen AD et al. (2020)	GSM4407628,GSM4407629,GSM4407630	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF42	ATAC-Seq	NF42	whole organism	Kakebeen AD et al. (2020)	GSM4407625,GSM4407626,GSM4407627	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF42	ATAC-Seq	NF42	whole organism	Kakebeen AD et al. (2020)	GSM4407625,GSM4407626,GSM4407627	ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE - NF41	ATAC-Seq	NF41	whole organism	Kakebeen AD et al. (2020)	GSM4407619,GSM4407620,GSM4407621,GSM4407622	ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF47	ATAC-Seq	NF47	whole organism	Kakebeen AD et al. (2020)	GSM4407631,GSM4407632,GSM4407633,GSM4407634	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF47	ATAC-Seq	NF47	whole organism	Kakebeen AD et al. (2020)	GSM4407631,GSM4407632,GSM4407633,GSM4407634	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	posterior tail - NF41 Pax6+	ATAC-Seq	NF41		Kakebeen AD et al. (2020)	GSM4407635,GSM4407636,GSM4407637	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	posterior tail - NF41 Pax6+	ATAC-Seq	NF41		Kakebeen AD et al. (2020)	GSM4407635,GSM4407636,GSM4407637	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF41 Pax6+	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2020)	GSM4407638,GSM4407639,GSM4407640	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF41 Pax6+	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2020)	GSM4407638,GSM4407639,GSM4407640	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF42 Pax6+	ATAC-Seq	NF42	regenerating tail	Kakebeen AD et al. (2020)	GSM4407641,GSM4407642,GSM4407643	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF42 Pax6+	ATAC-Seq	NF42	regenerating tail	Kakebeen AD et al. (2020)	GSM4407641,GSM4407642,GSM4407643	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF45 Pax6+	ATAC-Seq	NF45	regenerating tail	Kakebeen AD et al. (2020)	GSM4407644,GSM4407645,GSM4407646	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF45 Pax6+	ATAC-Seq	NF45	regenerating tail	Kakebeen AD et al. (2020)	GSM4407644,GSM4407645,GSM4407646	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF47 Pax6+	ATAC-Seq	NF47	regenerating tail	Kakebeen AD et al. (2020)	GSM4407647,GSM4407648,GSM4407649	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF47 Pax6+	ATAC-Seq	NF47	regenerating tail	Kakebeen AD et al. (2020)	GSM4407647,GSM4407648,GSM4407649	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_10.0/ATAC-Seq/Readme.txt
146836	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, A Kakebeen, A Wills	Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenopus tropicalis tadpoles and 24 hours post amputation regenerated tail tissue.	0	56933	SRP252466	posterior tail - NF41	RNA-Seq	NF41		Kakebeen AD et al. (2020)	GSM4407688	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Readme.txt
146836	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, A Kakebeen, A Wills	Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenopus tropicalis tadpoles and 24 hours post amputation regenerated tail tissue.	0	56933	SRP252466	regenerating tail - NF45	RNA-Seq	NF45	regenerating tail	Kakebeen AD et al. (2020)	GSM4407689	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_10.0/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF5	RNA-Seq	NF5	anatomical entity in		GSM4435542,GSM4435543,GSM4435544	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF5	RNA-Seq	NF5	anatomical entity in		GSM4435542,GSM4435543,GSM4435544	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF5	RNA-Seq	NF5	anatomical entity in		GSM4435542,GSM4435543,GSM4435544	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF6	RNA-Seq	NF6	anatomical entity in		GSM4435545,GSM4435546,GSM4435547	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF6	RNA-Seq	NF6	anatomical entity in		GSM4435545,GSM4435546,GSM4435547	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF6	RNA-Seq	NF6	anatomical entity in		GSM4435545,GSM4435546,GSM4435547	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF4	RNA-Seq	NF4	anatomical entity in		GSM4435539,GSM4435540,GSM4435541	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF4	RNA-Seq	NF4	anatomical entity in		GSM4435539,GSM4435540,GSM4435541	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF4	RNA-Seq	NF4	anatomical entity in		GSM4435539,GSM4435540,GSM4435541	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF8	RNA-Seq	NF8	anatomical entity in		GSM4435548,GSM4435549,GSM4435550	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF8	RNA-Seq	NF8	anatomical entity in		GSM4435548,GSM4435549,GSM4435550	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF8	RNA-Seq	NF8	anatomical entity in		GSM4435548,GSM4435549,GSM4435550	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF11	RNA-Seq	NF11	anatomical entity in		GSM4435551,GSM4435552,GSM4435553	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF11	RNA-Seq	NF11	anatomical entity in		GSM4435551,GSM4435552,GSM4435553	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF11	RNA-Seq	NF11	anatomical entity in		GSM4435551,GSM4435552,GSM4435553	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF14	RNA-Seq	NF14	anatomical entity in		GSM4435554,GSM4435555,GSM4435556	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF14	RNA-Seq	NF14	anatomical entity in		GSM4435554,GSM4435555,GSM4435556	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF14	RNA-Seq	NF14	anatomical entity in		GSM4435554,GSM4435555,GSM4435556	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF17	RNA-Seq	NF17	anatomical entity in		GSM4435557,GSM4435558,GSM4435559	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF17	RNA-Seq	NF17	anatomical entity in		GSM4435557,GSM4435558,GSM4435559	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 explant - NF17	RNA-Seq	NF17	anatomical entity in		GSM4435557,GSM4435558,GSM4435559	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF5	RNA-Seq	NF5	blastomere		GSM4435521,GSM4435522,GSM4435523	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF5	RNA-Seq	NF5	blastomere		GSM4435521,GSM4435522,GSM4435523	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF5	RNA-Seq	NF5	blastomere		GSM4435521,GSM4435522,GSM4435523	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF6	RNA-Seq	NF6	blastomere		GSM4435524,GSM4435525,GSM4435526	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF6	RNA-Seq	NF6	blastomere		GSM4435524,GSM4435525,GSM4435526	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF6	RNA-Seq	NF6	blastomere		GSM4435524,GSM4435525,GSM4435526	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF4	RNA-Seq	NF4	blastomere		GSM4435518,GSM4435519,GSM4435520	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF4	RNA-Seq	NF4	blastomere		GSM4435518,GSM4435519,GSM4435520	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF4	RNA-Seq	NF4	blastomere		GSM4435518,GSM4435519,GSM4435520	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF8	RNA-Seq	NF8	animal hemisphere		GSM4435527,GSM4435528,GSM4435529	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF8	RNA-Seq	NF8	animal hemisphere		GSM4435527,GSM4435528,GSM4435529	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF8	RNA-Seq	NF8	animal hemisphere		GSM4435527,GSM4435528,GSM4435529	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF11	RNA-Seq	NF11	ectoderm		GSM4435530,GSM4435531,GSM4435532	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF11	RNA-Seq	NF11	ectoderm		GSM4435530,GSM4435531,GSM4435532	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF11	RNA-Seq	NF11	ectoderm		GSM4435530,GSM4435531,GSM4435532	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF14	RNA-Seq	NF14	ectoderm		GSM4435533,GSM4435534,GSM4435535	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF14	RNA-Seq	NF14	ectoderm		GSM4435533,GSM4435534,GSM4435535	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF14	RNA-Seq	NF14	ectoderm		GSM4435533,GSM4435534,GSM4435535	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF17	RNA-Seq	NF17	ectoderm		GSM4435536,GSM4435537,GSM4435538	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF17	RNA-Seq	NF17	ectoderm		GSM4435536,GSM4435537,GSM4435538	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
147621	Paul Huber	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Purpose: Study the developing neural cell fate of the D1 blastomere in the 8-cell embryo. Determine what transcripts are dependant on cell/cell signal	Paul Huber, Kyle Dubiak, Paul Huber	Dissect tissue or explant mRNA profiles at 7 critical developmental timepoints, in triplicate, using Illumina NextSeq.	0	60223	SRP254296	blastomere D1 progeny- NF17	RNA-Seq	NF17	ectoderm		GSM4435536,GSM4435537,GSM4435538	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE147621/XENLA_10.1/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	pan-Sox17 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Mukherjee S et al. (2020)	GSM4477737,GSM4477738	ChIP-Seq/Transcription Factor/Sox17	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/ChIP-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF10.5	RNA-Seq	NF10.5	embryo	Mukherjee S et al. (2020)	GSM4477745,GSM4477773	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF10.5	RNA-Seq	NF10.5	embryo	Mukherjee S et al. (2020)	GSM4477745,GSM4477773	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF10	RNA-Seq	NF10	embryo	Mukherjee S et al. (2020)	GSM4477743,GSM4477771	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF10	RNA-Seq	NF10	embryo	Mukherjee S et al. (2020)	GSM4477743,GSM4477771	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF11	RNA-Seq	NF11	embryo	Mukherjee S et al. (2020)	GSM4477747,GSM4477775	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF11	RNA-Seq	NF11	embryo	Mukherjee S et al. (2020)	GSM4477747,GSM4477775	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF12	RNA-Seq	NF12	embryo	Mukherjee S et al. (2020)	GSM4477749,GSM4477777	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF12	RNA-Seq	NF12	embryo	Mukherjee S et al. (2020)	GSM4477749,GSM4477777	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1 MO - NF9	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477739,GSM4477767	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1 MO - NF9	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477739,GSM4477767	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF9.5	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477741,GSM4477769	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + sox17a MO + sox17b.1/b.2 MO - NF9.5	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477741,GSM4477769	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF10.5	RNA-Seq	NF10.5	embryo	Mukherjee S et al. (2020)	GSM4477762,GSM4477790	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF10	RNA-Seq	NF10	embryo	Mukherjee S et al. (2020)	GSM4477760,GSM4477788	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF11	RNA-Seq	NF11	embryo	Mukherjee S et al. (2020)	GSM4477764	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF12	RNA-Seq	NF12	embryo	Mukherjee S et al. (2020)	GSM4477766	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF7	RNA-Seq	NF7	embryo	Mukherjee S et al. (2020)	GSM4477752,GSM4477780	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF8	RNA-Seq	NF8	embryo	Mukherjee S et al. (2020)	GSM4477754,GSM4477782	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF9	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477756,GSM4477784	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF9.5	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477758,GSM4477786	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Mukherjee S et al. (2020)	GSM4477761,GSM4477789	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Mukherjee S et al. (2020)	GSM4477761,GSM4477789	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF10	RNA-Seq	NF10	embryo	Mukherjee S et al. (2020)	GSM4477759,GSM4477787	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF10	RNA-Seq	NF10	embryo	Mukherjee S et al. (2020)	GSM4477759,GSM4477787	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF11	RNA-Seq	NF11	embryo	Mukherjee S et al. (2020)	GSM4477763	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF11	RNA-Seq	NF11	embryo	Mukherjee S et al. (2020)	GSM4477763	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF12	RNA-Seq	NF12	embryo	Mukherjee S et al. (2020)	GSM4477765	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF12	RNA-Seq	NF12	embryo	Mukherjee S et al. (2020)	GSM4477765	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF7	RNA-Seq	NF7	embryo	Mukherjee S et al. (2020)	GSM4477751,GSM4477779	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF7	RNA-Seq	NF7	embryo	Mukherjee S et al. (2020)	GSM4477751,GSM4477779	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF8	RNA-Seq	NF8	embryo	Mukherjee S et al. (2020)	GSM4477753,GSM4477781	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF8	RNA-Seq	NF8	embryo	Mukherjee S et al. (2020)	GSM4477753,GSM4477781	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477755,GSM4477783	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477755,GSM4477783	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF9.5	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477757,GSM4477785	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE + ctnnb1 MO - NF9.5	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477757,GSM4477785	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF10	RNA-Seq	NF10	embryo	Mukherjee S et al. (2020)	GSM4477744,GSM4477772	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF10.5	RNA-Seq	NF10.5	embryo	Mukherjee S et al. (2020)	GSM4477746,GSM4477774	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF11	RNA-Seq	NF11	embryo	Mukherjee S et al. (2020)	GSM4477748,GSM4477776	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF12	RNA-Seq	NF12	embryo	Mukherjee S et al. (2020)	GSM4477750,GSM4477778	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF9	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477740,GSM4477768	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
148726	Kitt Paraiso	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	We report the ChIP-seq analysis of Sox17 genome-wide binding and its loss-of-function transcriptomic analysis of both Sox17 and Ctnnb1 (beta-catenin) 	Kitt Paraiso, Kitt Paraiso, Aaron Zorn, Shreyasi Mukherjee	ChIP-seq was performed to detect endogenous Sox17 binding (N&F stage 10.5) and RNA-seq was used to assess gene expression changes in Sox17 (N&F stages 9, 9.5, 10, 10.5, 11, 12) or Ctnnb1 (N&F stages 7, 8, 9, 9.5, 10, 10.5, 11, 12) in morpholino antisense oligo injected versus uninjected control embryos	32894225	57340	SRP256469	WE - NF9.5	RNA-Seq	NF9	embryo	Mukherjee S et al. (2020)	GSM4477742,GSM4477770	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE148726/XENTR_10.0/RNA-Seq/Readme.txt
149538	Arthur Willsey	Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos	DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In 	Arthur Willsey, Helen Willsey, A Willsey	3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing.	32467234	57038	SRP258988	brain + dyrk1a CRISPR - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2020)	GSM4504552,GSM4504553,GSM4504554	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Readme.txt
149538	Arthur Willsey	Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos	DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In 	Arthur Willsey, Helen Willsey, A Willsey	3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing.	32467234	57038	SRP258988	brain + dyrk1a CRISPR - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2020)	GSM4504552,GSM4504553,GSM4504554	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Readme.txt
149538	Arthur Willsey	Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos	DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In 	Arthur Willsey, Helen Willsey, A Willsey	3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing.	32467234	57038	SRP258988	brain - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2020)	GSM4504555,GSM4504556,GSM4504557	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		intestine - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551285,GSM4551286,GSM4551287	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		intestine - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551285,GSM4551286,GSM4551287	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		intestine + L-T3 - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551288,GSM4551289,GSM4551290	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		intestine + L-T3 - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551288,GSM4551289,GSM4551290	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		intestine + L-T3 - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551288,GSM4551289,GSM4551290	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		Xtr.thra{tmShiyb} intestine + L-T3 - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551294,GSM4551295,GSM4551296	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		Xtr.thra{tmShiyb} intestine + L-T3 - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551294,GSM4551295,GSM4551296	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		Xtr.thra{tmShiyb} intestine + L-T3 - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551294,GSM4551295,GSM4551296	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		Xtr.thra{tmShiyb} intestine - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551291,GSM4551292,GSM4551293	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150487	Henry Zhang	RNA sequencing of wild-type and TRα (-/-) intestine with and without T3 Treatment.	Conclusions: Our study represents the first detailed analysis of intestinal transcriptomes in wild-type and TRα (-/-) tadpoles, with biologic replica	Henry Zhang, Yuta Tanizaki, Hongen Zhang, Yun-Bo Shi	Examination of 3 technical replicate from the same RNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	32515287	57070		Xtr.thra{tmShiyb} intestine - NF52-54	RNA-Seq	NF52	intestine	Tanizaki Y et al. (2021)	GSM4551291,GSM4551292,GSM4551293	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150487/XENTR_10.0/RNA-Seq/Readme.txt
150911	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in  multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis	We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul	Stéphane REYNAUD	mRNAseq from liver of mature F1 and F2 females.	33234375	57563	SRP262433	liver - adult F1	RNA-Seq	adult 	liver	Usal M et al. (2021)	GSM4560793,GSM4560794,GSM4560795,GSM4560796,GSM4560797	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt
150911	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in  multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis	We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul	Stéphane REYNAUD	mRNAseq from liver of mature F1 and F2 females.	33234375	57563	SRP262433	liver - adult F2	RNA-Seq	adult 	liver	Usal M et al. (2021)	GSM4560804,GSM4560805,GSM4560806,GSM4560807,GSM4560808	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt
150911	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in  multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis	We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul	Stéphane REYNAUD	mRNAseq from liver of mature F1 and F2 females.	33234375	57563	SRP262433	liver + ancestral Benzo(a)pyrene exposure - adult F1	RNA-Seq	adult 	liver	Usal M et al. (2021)	GSM4560798,GSM4560799,GSM4560800,GSM4560801,GSM4560802,GSM4560803	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt
150911	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in  multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis	We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul	Stéphane REYNAUD	mRNAseq from liver of mature F1 and F2 females.	33234375	57563	SRP262433	liver + ancestral Benzo(a)pyrene exposure - adult F1	RNA-Seq	adult 	liver	Usal M et al. (2021)	GSM4560798,GSM4560799,GSM4560800,GSM4560801,GSM4560802,GSM4560803	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt
150911	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in  multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis	We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul	Stéphane REYNAUD	mRNAseq from liver of mature F1 and F2 females.	33234375	57563	SRP262433	liver + ancestral Benzo(a)pyrene exposure - adult F2	RNA-Seq	adult 	liver	Usal M et al. (2021)	GSM4560809,GSM4560810,GSM4560811,GSM4560812,GSM4560813	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt
150911	Stéphane REYNAUD	Using RNAseq for identifying hepatic genes involved in  multi- (F1 generation) and transgenerational (F2 generation) responses to chronic benzo[a]pyrene exposure (F0 generation) in Xenopus tropicalis	We investigated the multi- and transgenerational impact of BaP on Xenopus females following F0 generation exposure from the tadpole to the mature adul	Stéphane REYNAUD	mRNAseq from liver of mature F1 and F2 females.	33234375	57563	SRP262433	liver + ancestral Benzo(a)pyrene exposure - adult F2	RNA-Seq	adult 	liver	Usal M et al. (2021)	GSM4560809,GSM4560810,GSM4560811,GSM4560812,GSM4560813	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE150911/XENTR_10.0/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF5 polyA mRNA	RNA-Seq	NF5	embryo	Phelps WA et al. (2021)	GSM4629157	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF5 polyA mRNA	RNA-Seq	NF5	embryo	Phelps WA et al. (2021)	GSM4629157	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF5 rRNA depleted	RNA-Seq	NF5	embryo	Phelps WA et al. (2021)	GSM4629156	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF5 rRNA depleted	RNA-Seq	NF5	embryo	Phelps WA et al. (2021)	GSM4629156	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF8 polyA mRNA	RNA-Seq	NF8	embryo	Phelps WA et al. (2021)	GSM4629160	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF8 polyA mRNA	RNA-Seq	NF8	embryo	Phelps WA et al. (2021)	GSM4629160	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF8 rRNA depleted	RNA-Seq	NF8	embryo	Phelps WA et al. (2021)	GSM4629159	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF8 rRNA depleted	RNA-Seq	NF8	embryo	Phelps WA et al. (2021)	GSM4629159	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF8	RNA-Seq	NF8	embryo	Phelps WA et al. (2021)	GSM4629158	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
152902	Miler Lee	Optimized design of antisense oligomers for targeted RNA depletion	RNA sequencing (RNA-seq) has become a standard method for quantifying gene expression transcriptome-wide. Due to the extremely high proportion of ribo	Miler Lee, Wesley Phelps	RNA-seq with different mRNA enrichment methods	33221877	57554	SRP268142	WE - NF8	RNA-Seq	NF8	embryo	Phelps WA et al. (2021)	GSM4629158	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE152902/XENLA_10.1/RNA-Seq/Readme.txt
153058	Owen Smith	Identification and characterization of centromeric sequences in Xenopus laevis	Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach 	Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight	four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq	0	57139	SRP268455	CENP-A nucleate erythrocyte - adult	ChIP-Seq	adult 	nucleate erythrocyte		GSM4633643,GSM4633644,GSM4633645,GSM4633646,GSM4633647	ChIP-Seq/Epigenetic/CENP-A	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Readme.txt
153058	Owen Smith	Identification and characterization of centromeric sequences in Xenopus laevis	Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach 	Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight	four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq	0	57139	SRP268455	Histone H4 nucleate erythrocyte - adult	ChIP-Seq	adult 	nucleate erythrocyte		GSM4633648,GSM4633649,GSM4633650,GSM4633651,GSM4633652	ChIP-Seq/Epigenetic/H4	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Readme.txt
153058	Owen Smith	Identification and characterization of centromeric sequences in Xenopus laevis	Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach 	Owen Smith, Owen Smith, Charles Limouse, Kelsey Fryer, Nikki Teran, Kousik Sundararajan, Rebecca Heals, Aaron Straight	four replicates each of native Mnase ChIP-seq from CENP-A and H4 Ips, along with input seqeuncing libraries were sequenced on Illumina MiSeq. One replicate of each was further sequenced on Illumina HiSeq	0	57139	SRP268455	input nucleate erythrocyte - adult	ChIP-Seq	adult 	nucleate erythrocyte		GSM4633653,GSM4633654,GSM4633655,GSM4633656,GSM4633657	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153058/XENLA_10.1/ChIP-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF8	RNA-Seq	NF8	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658475,GSM4658476,GSM4658477	RNA-Seq/Embryonic Tissues/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF8	RNA-Seq	NF8	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658475,GSM4658476,GSM4658477	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF8	RNA-Seq	NF8	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658475,GSM4658476,GSM4658477	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF8	RNA-Seq	NF8	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658475,GSM4658476,GSM4658477	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - NF8	RNA-Seq	NF8	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658472,GSM4658473,GSM4658474	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - NF8	RNA-Seq	NF8	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658472,GSM4658473,GSM4658474	RNA-Seq/Embryonic Tissues/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF9	RNA-Seq	NF9	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658478,GSM4658479,GSM4658480	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF9	RNA-Seq	NF9	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658478,GSM4658479,GSM4658480	RNA-Seq/Embryonic Tissues/Blastula NF7 to NF9	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF9	RNA-Seq	NF9	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658478,GSM4658479,GSM4658480	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF9	RNA-Seq	NF9	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658478,GSM4658479,GSM4658480	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF10.25	RNA-Seq	NF10.25	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658481,GSM4658482,GSM4658483	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF10.25	RNA-Seq	NF10.25	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658481,GSM4658482,GSM4658483	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF10.25	RNA-Seq	NF10.25	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658481,GSM4658482,GSM4658483	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF10.25	RNA-Seq	NF10.25	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658481,GSM4658482,GSM4658483	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF12.5	RNA-Seq	NF12.5	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658484,GSM4658485,GSM4658486	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF12.5	RNA-Seq	NF12.5	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658484,GSM4658485,GSM4658486	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF12.5	RNA-Seq	NF12.5	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658484,GSM4658485,GSM4658486	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
153925	Jun-Dal Kim	Comprehensive expression profile reveals dynamic changes in Xenopus gene expression depending on the duration of activin A treatment.	In amphibian embryo, the animal cap explants treated with activin A, which is a member of TGF-β family protein, have a potent of Spemann-Mangold orga	Jun-Dal Kim, Yumeko Kobayashi, Makoto Asashima, Akiyoshi Fukamizu	Time-course RNA expression data from Xenopus animal cap treated with activin A. mRNA profiles of animal caps were generated by RNA sequencing using the NextSeq 500 (Illumina).	34267234	58287	SRP270638	animal cap - Activin + animal cap explant - NF12.5	RNA-Seq	NF12.5	animal cap	Satou-Kobayashi Y et al. (2021)	GSM4658484,GSM4658485,GSM4658486	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE153925/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670472,GSM4670488,GSM4670504,GSM4670520,GSM4670536,GSM4670552	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670472,GSM4670488,GSM4670504,GSM4670520,GSM4670536,GSM4670552	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670475,GSM4670491,GSM4670507,GSM4670523,GSM4670539,GSM4670555	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670475,GSM4670491,GSM4670507,GSM4670523,GSM4670539,GSM4670555	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670475,GSM4670491,GSM4670507,GSM4670523,GSM4670539,GSM4670555	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670479,GSM4670495,GSM4670511,GSM4670527,GSM4670543,GSM4670559	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670479,GSM4670495,GSM4670511,GSM4670527,GSM4670543,GSM4670559	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670479,GSM4670495,GSM4670511,GSM4670527,GSM4670543,GSM4670559	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670483,GSM4670499,GSM4670515,GSM4670531,GSM4670547,GSM4670563	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670483,GSM4670499,GSM4670515,GSM4670531,GSM4670547,GSM4670563	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670483,GSM4670499,GSM4670515,GSM4670531,GSM4670547,GSM4670563	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670487,GSM4670503,GSM4670519,GSM4670535,GSM4670551,GSM4670567	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670487,GSM4670503,GSM4670519,GSM4670535,GSM4670551,GSM4670567	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + EtOH - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670487,GSM4670503,GSM4670519,GSM4670535,GSM4670551,GSM4670567	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670473,GSM4670489,GSM4670505,GSM4670521,GSM4670537,GSM4670553	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670473,GSM4670489,GSM4670505,GSM4670521,GSM4670537,GSM4670553	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670473,GSM4670489,GSM4670505,GSM4670521,GSM4670537,GSM4670553	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670477,GSM4670493,GSM4670509,GSM4670525,GSM4670541,GSM4670557	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670477,GSM4670493,GSM4670509,GSM4670525,GSM4670541,GSM4670557	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670477,GSM4670493,GSM4670509,GSM4670525,GSM4670541,GSM4670557	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670481,GSM4670497,GSM4670513,GSM4670529,GSM4670545,GSM4670561	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670481,GSM4670497,GSM4670513,GSM4670529,GSM4670545,GSM4670561	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670481,GSM4670497,GSM4670513,GSM4670529,GSM4670545,GSM4670561	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670485,GSM4670501,GSM4670517,GSM4670533,GSM4670549,GSM4670565	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670485,GSM4670501,GSM4670517,GSM4670533,GSM4670549,GSM4670565	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + Retinoic acid - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670485,GSM4670501,GSM4670517,GSM4670533,GSM4670549,GSM4670565	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670474,GSM4670490,GSM4670506,GSM4670522,GSM4670538,GSM4670554	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670474,GSM4670490,GSM4670506,GSM4670522,GSM4670538,GSM4670554	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF10.25	RNA-Seq	NF10.25	embryo	Parihar M et al. (2021)	GSM4670474,GSM4670490,GSM4670506,GSM4670522,GSM4670538,GSM4670554	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670478,GSM4670494,GSM4670510,GSM4670526,GSM4670542,GSM4670558	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670478,GSM4670494,GSM4670510,GSM4670526,GSM4670542,GSM4670558	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670478,GSM4670494,GSM4670510,GSM4670526,GSM4670542,GSM4670558	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670482,GSM4670498,GSM4670514,GSM4670530,GSM4670546,GSM4670562	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670482,GSM4670498,GSM4670514,GSM4670530,GSM4670546,GSM4670562	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670482,GSM4670498,GSM4670514,GSM4670530,GSM4670546,GSM4670562	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670486,GSM4670502,GSM4670518,GSM4670534,GSM4670550,GSM4670566	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670486,GSM4670502,GSM4670518,GSM4670534,GSM4670550,GSM4670566	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE + DEAB - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670486,GSM4670502,GSM4670518,GSM4670534,GSM4670550,GSM4670566	Manipulations/Chemical	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670476,GSM4670492,GSM4670508,GSM4670524,GSM4670540,GSM4670556	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF11.5	RNA-Seq	NF11.5	embryo	Parihar M et al. (2021)	GSM4670476,GSM4670492,GSM4670508,GSM4670524,GSM4670540,GSM4670556	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670480,GSM4670496,GSM4670512,GSM4670528,GSM4670544,GSM4670560	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF12	RNA-Seq	NF12	embryo	Parihar M et al. (2021)	GSM4670480,GSM4670496,GSM4670512,GSM4670528,GSM4670544,GSM4670560	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670484,GSM4670500,GSM4670516,GSM4670532,GSM4670548,GSM4670564	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154399	Rajanikanth Vadigepalli	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Retinoic acid (RA) is a central developmental signal whose perturbation results in teratogenic outcomes. RA are tightly regulated during early embryon	Rajanikanth Vadigepalli, Madhur Parihar, Liat Bendelac-Kapon, Michal Gur, Abha Belorkar, Keren Kinberg, Abraham Fainsod	We considered multiple experimental perturbations including exogenous addition of 10 nM RA, inhibition of RA production by 50 uM DEAB (an inhibitor of RALDH2 enzyme), 0.5% ethanol exposure, and no exposure control. We obtained data from six independent clutches for each experimental condition. The embryos were isolated at multiple time points (t=0, 1.5, 3, and 4.5 hours) following two hours of perturbation and a wash.	34746144	58611	SRP224065	WE - NF12.5	RNA-Seq	NF12.5	embryo	Parihar M et al. (2021)	GSM4670484,GSM4670500,GSM4670516,GSM4670532,GSM4670548,GSM4670564	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154399/XENLA_10.1/RNA-Seq/Readme.txt
154766	Chao Yang	Detection of RNAs binding to Vg1 RNP	We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA  in oocyte	Chao Yang, Paul Huber	Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus  oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added to the oocyte extract to specificly pull down the biotin-Vg1 RNP. After extensive washes, biotin-Vg1 RNP were eluted off by incubating the beads with free biotin and the associted RNAs were extracted by phenol and precipitated by ethanol.For RNA sequencing strategy, a single RNA library was prepared and sequenced on an Illumina MiSeq nano 300 cycle reagent kit.	0	57689	SRP272643	oocyte + biotin-gdf1 + streptavidin-beads - oocyte  III-IV	RNA-Seq	oocyte  III	oocyte		GSM4679353	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt
154766	Chao Yang	Detection of RNAs binding to Vg1 RNP	We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA  in oocyte	Chao Yang, Paul Huber	Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus  oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added to the oocyte extract to specificly pull down the biotin-Vg1 RNP. After extensive washes, biotin-Vg1 RNP were eluted off by incubating the beads with free biotin and the associted RNAs were extracted by phenol and precipitated by ethanol.For RNA sequencing strategy, a single RNA library was prepared and sequenced on an Illumina MiSeq nano 300 cycle reagent kit.	0	57689	SRP272643	oocyte + biotin-gdf1 + streptavidin-beads - oocyte  III-IV	RNA-Seq	oocyte  III	oocyte		GSM4679353	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt
154766	Chao Yang	Detection of RNAs binding to Vg1 RNP	We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA  in oocyte	Chao Yang, Paul Huber	Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus  oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added to the oocyte extract to specificly pull down the biotin-Vg1 RNP. After extensive washes, biotin-Vg1 RNP were eluted off by incubating the beads with free biotin and the associted RNAs were extracted by phenol and precipitated by ethanol.For RNA sequencing strategy, a single RNA library was prepared and sequenced on an Illumina MiSeq nano 300 cycle reagent kit.	0	57689	SRP272643	oocyte + biotin-gdf1 + streptavidin-beads - oocyte  III-IV	RNA-Seq	oocyte  III	oocyte		GSM4679353	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt
154766	Chao Yang	Detection of RNAs binding to Vg1 RNP	We report the application of NGS for high-throughput profiling of transcripts assoicated with the ribonuleoprotein (RNP) formed on Vg1 mRNA  in oocyte	Chao Yang, Paul Huber	Biriefly, Biotinylated-Vg1 RNA was microinjected into Xenopus  oocyte to allow formation of RNP complex in vivo. Next, streptavidin beads were added to the oocyte extract to specificly pull down the biotin-Vg1 RNP. After extensive washes, biotin-Vg1 RNP were eluted off by incubating the beads with free biotin and the associted RNAs were extracted by phenol and precipitated by ethanol.For RNA sequencing strategy, a single RNA library was prepared and sequenced on an Illumina MiSeq nano 300 cycle reagent kit.	0	57689	SRP272643	oocyte + biotin-gdf1 + streptavidin-beads - oocyte  III-IV	RNA-Seq	oocyte  III	oocyte		GSM4679353	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE154766/XENLA_10.1/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain - NF40	RNA-Seq	NF40	brain	Willsey HR et al. (2021)	GSM4706056,GSM4706057,GSM4706058	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain - NF42	RNA-Seq	NF42	brain	Willsey HR et al. (2021)	GSM4706059,GSM4706060,GSM4706061	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain - NF44	RNA-Seq	NF44	brain	Willsey HR et al. (2021)	GSM4706062,GSM4706063,GSM4706064	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain - NF45	RNA-Seq	NF45	brain	Willsey HR et al. (2021)	GSM4706065,GSM4706066,GSM4706067	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2021)	GSM4706068,GSM4706069,GSM4706070	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain - NF47	RNA-Seq	NF47	brain	Willsey HR et al. (2021)	GSM4706071,GSM4706072,GSM4706073	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain + estradiol - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2021)	GSM4706047,GSM4706048,GSM4706049	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain + estradiol - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2021)	GSM4706047,GSM4706048,GSM4706049	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain + CYCLOPAMINE - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2021)	GSM4706050,GSM4706051,GSM4706052	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain + CYCLOPAMINE - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2021)	GSM4706050,GSM4706051,GSM4706052	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
155553	Arthur Willsey	Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience [Xenopus]	Gene Ontology analyses of autism spectrum disorders (ASD) risk genes have repeatedly highlighted synaptic function and transcriptional regulation as k	Arthur Willsey, Helen Willsey, A Willsey	3 pooled stage 46 brains in triplicate. DMSO-treated samples are the controls.	33497602	57754	SRP275563	brain - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2021)	GSM4706053,GSM4706054,GSM4706055	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE155553/XENTR_10.0/RNA-Seq/Readme.txt
158331	Anneke Kakebeen	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches 	Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan	The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to regenerated until desired collection timepoint. The regenerated tail was isolated from the tadpole and cells were dissociated into single cell suspension using Liberase, washed in PBS and sorted for fluoresence through an Aria III cell sorter.	33137227	57511	SRP284834	regenerating tail + posterior tail amputation - NF41 FACS	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2021)	GSM4797961	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt
158331	Anneke Kakebeen	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches 	Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan	The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to regenerated until desired collection timepoint. The regenerated tail was isolated from the tadpole and cells were dissociated into single cell suspension using Liberase, washed in PBS and sorted for fluoresence through an Aria III cell sorter.	33137227	57511	SRP284834	regenerating tail + posterior tail amputation - NF41 FACS	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2021)	GSM4797961	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt
158331	Anneke Kakebeen	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches 	Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan	The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to regenerated until desired collection timepoint. The regenerated tail was isolated from the tadpole and cells were dissociated into single cell suspension using Liberase, washed in PBS and sorted for fluoresence through an Aria III cell sorter.	33137227	57511	SRP284834	regenerating tail + posterior tail amputation - NF41	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2021)	GSM4797960	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt
158331	Anneke Kakebeen	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Xenopus embryos and tadpoles are versatile models for embryological, cell biological, and regenerative studies. Genomic and transcriptomic approaches 	Anneke Kakebeen, Anneke Kakebeen, Alex Chitsazan	The posterior third of an anestitized tadpole tail was amputated at NF stage 41. Tadpoles were replaced in media without anesthetiz and allowed to regenerated until desired collection timepoint. The regenerated tail was isolated from the tadpole and cells were dissociated into single cell suspension using Liberase, washed in PBS and sorted for fluoresence through an Aria III cell sorter.	33137227	57511	SRP284834	regenerating tail + posterior tail amputation - NF41	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2021)	GSM4797960	Manipulations/Other	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158331/XENTR_10.0/ATAC-Seq/Readme.txt
158664	Evgeny Orlov	Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison	To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar	Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky	Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage)	0	57685	SRP285632	WE - NF12.5	RNA-Seq	NF12.5	embryo		GSM4805186,GSM4805187,GSM4805188	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Readme.txt
158664	Evgeny Orlov	Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison	To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar	Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky	Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage)	0	57685	SRP285632	WE - blastomere explant - NF12.5	RNA-Seq	NF12.5	embryo		GSM4805183,GSM4805184,GSM4805185	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Readme.txt
158664	Evgeny Orlov	Identification of genes with different expression in wild- and half-size Xenopus laevis embryos by transcriptome comparison	To identify genes with different expression levels in Xenopus laevis embryos of different sizes, RNAseq of middle gastrula RNA of the wild-size and ar	Evgeny Orlov, Eugeny Orlov, Andrey Zaraisky	Three biological replicates were analyzed for 2 conditions (intact embryos vs their siblings divided at two-blastomere stage)	0	57685	SRP285632	WE - blastomere explant - NF12.5	RNA-Seq	NF12.5	embryo		GSM4805183,GSM4805184,GSM4805185	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE158664/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	animal cap explant - NF11	RNA-Seq	NF11	animal cap	Kakebeen AD et al. (2021)	GSM4879085,GSM4879097	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	animal cap explant - NF11	RNA-Seq	NF11	animal cap	Kakebeen AD et al. (2021)	GSM4879085,GSM4879097	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	ventral marginal zone explant - NF11	RNA-Seq	NF11	ventral marginal zon	Kakebeen AD et al. (2021)	GSM4879086,GSM4879098	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	ventral marginal zone explant - NF11	RNA-Seq	NF11	ventral marginal zon	Kakebeen AD et al. (2021)	GSM4879086,GSM4879098	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF11	RNA-Seq	NF11	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879076,GSM4879088	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF11	RNA-Seq	NF11	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879076,GSM4879088	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF11.5	RNA-Seq	NF11.5	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879075,GSM4879087	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF11.5	RNA-Seq	NF11.5	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879075,GSM4879087	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF12	RNA-Seq	NF12	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879078,GSM4879090	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF12	RNA-Seq	NF12	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879078,GSM4879090	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF12.5	RNA-Seq	NF12.5	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879077,GSM4879089	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF12.5	RNA-Seq	NF12.5	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879077,GSM4879089	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF13	RNA-Seq	NF13	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879079,GSM4879091	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF13	RNA-Seq	NF13	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879079,GSM4879091	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF14	RNA-Seq	NF14	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879080,GSM4879092	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF14	RNA-Seq	NF14	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879080,GSM4879092	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF15	RNA-Seq	NF15	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879081,GSM4879093	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF15	RNA-Seq	NF15	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879081,GSM4879093	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF16	RNA-Seq	NF16	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879082,GSM4879094	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF16	RNA-Seq	NF16	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879082,GSM4879094	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF17	RNA-Seq	NF17	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879083,GSM4879095	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF17	RNA-Seq	NF17	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879083,GSM4879095	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF18	RNA-Seq	NF18	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879084,GSM4879096	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
160777	Anneke Kakebeen	A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone	Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from earl	Anneke Kakebeen, Anneke Kakebeenm, Robert Huebner, Asako Shindo, Kujin Kwon, Taejoon Kwon, Andrea Wills, John Wallingford	RNA-Seq analysis of a timecourse of dorsal marginal zone explants from Xenopus embryos from stage 11 to stage 18.	0	57664	SRP291031	dorsal marginal zone explant - NF18	RNA-Seq	NF18	dorsal marginal zone	Kakebeen AD et al. (2021)	GSM4879084,GSM4879096	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE160777/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903938,GSM4903939	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903938,GSM4903939	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903938,GSM4903939	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903938,GSM4903939	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903940,GSM4903941	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903940,GSM4903941	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903940,GSM4903941	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161247	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset1]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 2 biological replicates.	37116939	59747	SRP292400	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903940,GSM4903941	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161247/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903942,GSM4903943	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903942,GSM4903943	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903942,GSM4903943	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903942,GSM4903943	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903944,GSM4903945	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903944,GSM4903945	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903944,GSM4903945	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903944,GSM4903945	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161248	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset2]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Xenopus Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions in 2 biological replicates.	37116939	59747	SRP292401	animal cap - phf8 + kmt5b MO + kmt5c MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903944,GSM4903945	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161248/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903946,GSM4903947,GSM4903948	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903946,GSM4903947,GSM4903948	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903946,GSM4903947,GSM4903948	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903946,GSM4903947,GSM4903948	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Eco.lacz + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903949,GSM4903950,GSM4903951	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Eco.lacz + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903949,GSM4903950,GSM4903951	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Eco.lacz + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903949,GSM4903950,GSM4903951	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Eco.lacz + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903949,GSM4903950,GSM4903951	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903952,GSM4903953,GSM4903954	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903952,GSM4903953,GSM4903954	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903952,GSM4903953,GSM4903954	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903952,GSM4903953,GSM4903954	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903955,GSM4903956,GSM4903957	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903955,GSM4903956,GSM4903957	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903955,GSM4903956,GSM4903957	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903955,GSM4903956,GSM4903957	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161249	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset3]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Irina Shcherbakova, Ralph Rupp	RNA-seq experiment of human Phf8 mRNA injection in Suv4-20H1/2 knock down or control conditions (i.e. control morpholino, LacZ mRNA) in 3 biological replicates.	37116939	59747	SRP292402	animal cap - Hsa.phf8 + kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903955,GSM4903956,GSM4903957	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161249/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903958,GSM4903959,GSM4903960	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903958,GSM4903959,GSM4903960	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903958,GSM4903959,GSM4903960	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903958,GSM4903959,GSM4903960	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903964,GSM4903965	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903964,GSM4903965	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903964,GSM4903965	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903964,GSM4903965	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903968,GSM4903969,GSM4903970	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903968,GSM4903969,GSM4903970	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903968,GSM4903969,GSM4903970	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - hbg1 cMO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903968,GSM4903969,GSM4903970	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903961,GSM4903962,GSM4903963	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903961,GSM4903962,GSM4903963	RNA-Seq/Embryonic Tissues/Gastrula NF10 to NF12.5	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903961,GSM4903962,GSM4903963	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF10	RNA-Seq	NF10	animal cap	Angerilli A et al. (2023)	GSM4903961,GSM4903962,GSM4903963	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903971,GSM4903972,GSM4903973	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903971,GSM4903972,GSM4903973	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903971,GSM4903972,GSM4903973	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF24	RNA-Seq	NF24	animal cap	Angerilli A et al. (2023)	GSM4903971,GSM4903972,GSM4903973	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903966,GSM4903967	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903966,GSM4903967	RNA-Seq/Embryonic Tissues/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903966,GSM4903967	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161250	Tamas Schauer	Genome wide analysis of Suv4-20h1/2 depleted animal caps [dataset4]	Suv4-20h1/2 are histone methyltransferases that write the H4K20me2 and H4K20me3 marks. We knocked down these enzymes using translation blocking morph	Tamas Schauer, Alessandro Angerilli, Janet Tait, Pawel Smialowski, Ralph Rupp	RNA-seq experiment of Suv4-20H1/2 and Control morpholino knock down in 3 developmental stages and in 2 or 3 biological replicates.	37116939	59747	SRP292404	animal cap - kmt5c MO + kmt5b MO + animal cap explant - NF16	RNA-Seq	NF16	animal cap	Angerilli A et al. (2023)	GSM4903966,GSM4903967	Manipulations/Morpholino	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161250/XENLA_10.1/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE - NF9	RNA-Seq	NF9	embryo	Jansen C et al. (2022)	GSM4910712,GSM4910713	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE - NF9	RNA-Seq	NF9	embryo	Jansen C et al. (2022)	GSM4910712,GSM4910713	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE - NF10	RNA-Seq	NF10	embryo	Jansen C et al. (2022)	GSM4910714,GSM4910715	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE - NF10	RNA-Seq	NF10	embryo	Jansen C et al. (2022)	GSM4910714,GSM4910715	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE - NF10.5	RNA-Seq	NF10.5	embryo	Jansen C et al. (2022)	GSM4910716,GSM4910717	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE - NF10.5	RNA-Seq	NF10.5	embryo	Jansen C et al. (2022)	GSM4910716,GSM4910717	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF9	RNA-Seq	NF9	embryo	Jansen C et al. (2022)	GSM4910706,GSM4910707	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF9	RNA-Seq	NF9	embryo	Jansen C et al. (2022)	GSM4910706,GSM4910707	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF9	RNA-Seq	NF9	embryo	Jansen C et al. (2022)	GSM4910706,GSM4910707	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF10	RNA-Seq	NF10	embryo	Jansen C et al. (2022)	GSM4910708,GSM4910709	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF10	RNA-Seq	NF10	embryo	Jansen C et al. (2022)	GSM4910708,GSM4910709	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF10	RNA-Seq	NF10	embryo	Jansen C et al. (2022)	GSM4910708,GSM4910709	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Jansen C et al. (2022)	GSM4910710,GSM4910711	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Jansen C et al. (2022)	GSM4910710,GSM4910711	RNA-Seq/Whole Embryo/Gastrula NF10 to NF12.5	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161600	Kitt Paraiso	Uncovering the mesendoderm gene regulatory network through multi-omic data integration [RNA-Seq]	We report the ChIP-seq analysis of multiple Xenopus transcription factors binding. Also, we report loss-of-function transcriptomic analysis of Tcf7l1 	Kitt Paraiso, Kitt Paraiso	ChIP-seq was performed using antibodies against Xenopus tropicalis transcription factors (Mix1, Sia1, Smad1, Sox7, Vegt and Ventx2) where embryos were processed at different stages of early development. RNA-seq datasets were generated from uninjected embryos and Tcf7l1 morpholino injected embryos. These multi-omic datasets, along with literature curated ChIP-seq, RNA-seq and ATAC-seq datasets, were analyzed using Self-Organizing Maps to elucidate the gene regulatory network principles of early mesendoderm development.	35172134	58965	SRP292871	WE + tcf7l1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Jansen C et al. (2022)	GSM4910710,GSM4910711	Manipulations/Morpholino	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161600/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	Xtr.thra{tm},thrb{tmShiyb} intestine - NF54	RNA-Seq	NF54	intestine	Shibata Y et al. (2021)	GSM4913147,GSM4913148,GSM4913149	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	Xtr.thra{tm},thrb{tmShiyb} intestine - NF54	RNA-Seq	NF54	intestine	Shibata Y et al. (2021)	GSM4913147,GSM4913148,GSM4913149	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	intestine - NF54	RNA-Seq	NF54	intestine	Shibata Y et al. (2021)	GSM4913144,GSM4913145,GSM4913146	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	intestine - NF54	RNA-Seq	NF54	intestine	Shibata Y et al. (2021)	GSM4913144,GSM4913145,GSM4913146	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	Xtr.thra{tm},thrb{tmShiyb} intestine - NF61	RNA-Seq	NF61	intestine	Shibata Y et al. (2021)	GSM4913153,GSM4913154,GSM4913155	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	Xtr.thra{tm},thrb{tmShiyb} intestine - NF61	RNA-Seq	NF61	intestine	Shibata Y et al. (2021)	GSM4913153,GSM4913154,GSM4913155	RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	intestine - NF61	RNA-Seq	NF61	intestine	Shibata Y et al. (2021)	GSM4913150,GSM4913151,GSM4913152	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161714	Henry Zhang	Thyroid hormone receptor is essential for larval eptiehlial apoptosis and adult epithelial stem cell development	Our experiment revealed that TR double knockout completely blocks intestinal length shortening, larval cell death, and adult stem cell development, de	Henry Zhang, Yuki Shibata, Yun-Bo Shi, Hongen Zhang	Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine during metamorphosis climax of Xenopus tropicalis	33802526	57996	SRP293086	intestine - NF61	RNA-Seq	NF61	intestine	Shibata Y et al. (2021)	GSM4913150,GSM4913151,GSM4913152	RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161714/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	intestine - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913234,GSM4913235,GSM4913236	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	intestine - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913234,GSM4913235,GSM4913236	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	intestine + L-T3 - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913237,GSM4913238,GSM4913239	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	intestine + L-T3 - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913237,GSM4913238,GSM4913239	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	intestine + L-T3 - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913237,GSM4913238,GSM4913239	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	itr.thra{tmShiyb} intestine - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913228,GSM4913229,GSM4913230	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	itr.thra{tmShiyb} intestine - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913228,GSM4913229,GSM4913230	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	Xtr.thra{tmShiyb} intestine + L-T3 - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913231,GSM4913232,GSM4913233	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	Xtr.thra{tmShiyb} intestine + L-T3 - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913231,GSM4913232,GSM4913233	Manipulations/Chemical	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
161718	Henry Zhang	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Our study represents the first detailed analysis of thyroid hormone binding to the genome in the intestine of wild-type and TRα (-/-) tadpoles, with 	Henry Zhang, Yuta Tanizaki, Yun-Bo Shi, Hongen Zhang	Examination of 3 technical replicates from the same ChIP-DNA sample which extracted and merged from the several Xenopus tropicalis tadpoles.	35132135	58978	SRP293094	Xtr.thra{tmShiyb} intestine + L-T3 - NF54	RNA-Seq	NF54	intestine	Tanizaki Y et al. (2022)	GSM4913231,GSM4913232,GSM4913233	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE161718/XENTR_10.0/RNA-Seq/Readme.txt
164204	Juan Larraín	Cellular response to spinal cord injury in regenerative and non-regenerative stages in Xenopus laevis.	Background: The efficient regenerative abilities at larvae stages followed by a non-regenerative response after metamorphosis in froglets makes Xenopu	Juan Larraín, Gabriela Edwards-Faret, Karina González-Pinto, Arantxa Cebrián-Silla, Johany Peñailillo, José García-Verdugo	Characterization of cell population GFAP::EGFP from the transgenic line Xla.Tg(Dre.gfap:EGFP)Larra in regenerative stages of Xenopus laevis	33526076	57773	SRP300206	spinal cord GFP+ - NF50	RNA-Seq	NF50	spinal cord	Edwards-Faret G et al. (2021)	GSM5003919	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Readme.txt
164204	Juan Larraín	Cellular response to spinal cord injury in regenerative and non-regenerative stages in Xenopus laevis.	Background: The efficient regenerative abilities at larvae stages followed by a non-regenerative response after metamorphosis in froglets makes Xenopu	Juan Larraín, Gabriela Edwards-Faret, Karina González-Pinto, Arantxa Cebrián-Silla, Johany Peñailillo, José García-Verdugo	Characterization of cell population GFAP::EGFP from the transgenic line Xla.Tg(Dre.gfap:EGFP)Larra in regenerative stages of Xenopus laevis	33526076	57773	SRP300206	spinal cord GFP- - NF50	RNA-Seq	NF50	spinal cord	Edwards-Faret G et al. (2021)	GSM5003918	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE164204/XENLA_10.1/RNA-Seq/Readme.txt
165343	Juan Larraín	High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling	Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use	Juan Larraín, Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Elena De Domenico, Ilya Patrushev, Mike Gilchrist	Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis.	34686684	58545	SRP302901	spinal cord - NF50	RNA-Seq	NF50	spinal cord	Peñailillo J et al. (2021)	GSM5031806,GSM5031807	None	laevis	XL101	XENLA_10.1	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165343/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE - NF18	RNA-Seq	NF18	embryo		GSM5049608,GSM5049609,GSM5049610,GSM5049611,GSM5049612	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE - NF18	RNA-Seq	NF18	embryo		GSM5049608,GSM5049609,GSM5049610,GSM5049611,GSM5049612	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049645,GSM5049646,GSM5049647,GSM5049648,GSM5049649	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049645,GSM5049646,GSM5049647,GSM5049648,GSM5049649	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm self transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049650,GSM5049651	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm self transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049650,GSM5049651	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm self transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049650,GSM5049651	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm self transplant - NF18	RNA-Seq	NF18	embryo		GSM5049613,GSM5049614	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm self transplant - NF18	RNA-Seq	NF18	embryo		GSM5049613,GSM5049614	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm self transplant - NF18	RNA-Seq	NF18	embryo		GSM5049613,GSM5049614	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant + rotation - NF18	RNA-Seq	NF18	embryo		GSM5049620,GSM5049621,GSM5049622,GSM5049623,GSM5049624	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant + rotation - NF18	RNA-Seq	NF18	embryo		GSM5049620,GSM5049621,GSM5049622,GSM5049623,GSM5049624	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant + rotation - NF18	RNA-Seq	NF18	embryo		GSM5049620,GSM5049621,GSM5049622,GSM5049623,GSM5049624	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant + rotation - NF18	RNA-Seq	NF18	embryo		GSM5049635,GSM5049636,GSM5049637,GSM5049638,GSM5049639	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant + rotation - NF18	RNA-Seq	NF18	embryo		GSM5049635,GSM5049636,GSM5049637,GSM5049638,GSM5049639	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant + rotation - NF18	RNA-Seq	NF18	embryo		GSM5049635,GSM5049636,GSM5049637,GSM5049638,GSM5049639	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm sham transplant - NF18	RNA-Seq	NF18	embryo		GSM5049625,GSM5049626,GSM5049627,GSM5049628,GSM5049629	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm sham transplant - NF18	RNA-Seq	NF18	embryo		GSM5049625,GSM5049626,GSM5049627,GSM5049628,GSM5049629	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm sham transplant - NF18	RNA-Seq	NF18	embryo		GSM5049625,GSM5049626,GSM5049627,GSM5049628,GSM5049629	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant - NF18	RNA-Seq	NF18	embryo		GSM5049615,GSM5049616,GSM5049617,GSM5049618,GSM5049619	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant - NF18	RNA-Seq	NF18	embryo		GSM5049615,GSM5049616,GSM5049617,GSM5049618,GSM5049619	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant - NF18	RNA-Seq	NF18	embryo		GSM5049615,GSM5049616,GSM5049617,GSM5049618,GSM5049619	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm sham transplant - NF18	RNA-Seq	NF18	embryo		GSM5049640,GSM5049641,GSM5049642,GSM5049643,GSM5049644	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm sham transplant - NF18	RNA-Seq	NF18	embryo		GSM5049640,GSM5049641,GSM5049642,GSM5049643,GSM5049644	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm sham transplant - NF18	RNA-Seq	NF18	embryo		GSM5049640,GSM5049641,GSM5049642,GSM5049643,GSM5049644	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant - NF18	RNA-Seq	NF18	embryo		GSM5049630,GSM5049631,GSM5049632,GSM5049633,GSM5049634	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant - NF18	RNA-Seq	NF18	embryo		GSM5049630,GSM5049631,GSM5049632,GSM5049633,GSM5049634	RNA-Seq/Whole Embryo/Gastrula NF13 to NF21	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant - NF18	RNA-Seq	NF18	embryo		GSM5049630,GSM5049631,GSM5049632,GSM5049633,GSM5049634	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant + rotation - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049657,GSM5049658,GSM5049659,GSM5049660,GSM5049661	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant + rotation - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049657,GSM5049658,GSM5049659,GSM5049660,GSM5049661	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant + rotation - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049657,GSM5049658,GSM5049659,GSM5049660,GSM5049661	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm sham transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049662,GSM5049663,GSM5049664,GSM5049665,GSM5049666	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm sham transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049662,GSM5049663,GSM5049664,GSM5049665,GSM5049666	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm sham transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049662,GSM5049663,GSM5049664,GSM5049665,GSM5049666	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049652,GSM5049653,GSM5049654,GSM5049655,GSM5049656	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049652,GSM5049653,GSM5049654,GSM5049655,GSM5049656	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF11 neuroectoderm transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049652,GSM5049653,GSM5049654,GSM5049655,GSM5049656	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant + rotation - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049672,GSM5049673,GSM5049674,GSM5049675,GSM5049676	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant + rotation - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049672,GSM5049673,GSM5049674,GSM5049675,GSM5049676	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant + rotation - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049672,GSM5049673,GSM5049674,GSM5049675,GSM5049676	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm sham transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049677,GSM5049678,GSM5049679,GSM5049680,GSM5049681	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm sham transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049677,GSM5049678,GSM5049679,GSM5049680,GSM5049681	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm sham transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049677,GSM5049678,GSM5049679,GSM5049680,GSM5049681	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049667,GSM5049668,GSM5049669,GSM5049670,GSM5049671	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049667,GSM5049668,GSM5049669,GSM5049670,GSM5049671	Manipulations/Other	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
165763	Margaret Saha	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	To analyze the limits of embryo robustness, several different types of surgeries were performed on the anterior-posterior neural axis of Xenopus laevi	Margaret Saha, Margaret Saha, LeAnn Lo, Bryan Weselman	RNA-Seq data of sequenced X.laevis embryos with varying surgeries and an accompanying sibling control	0	60222	SRP303801	WE + NF12 neuroectoderm transplant - NF29/30	RNA-Seq	NF29/30	embryo		GSM5049667,GSM5049668,GSM5049669,GSM5049670,GSM5049671	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE165763/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + eGFP - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074341	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + eGFP - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074341	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + eGFP - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074341	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + eGFP - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074338	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + eGFP - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074338	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + eGFP - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074338	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1 - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074339	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1 - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074339	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1 - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074339	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1l - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074340	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1l - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074340	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1l - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074340	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + water injection - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074337	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + water injection - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074337	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1l - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074342	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1l - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074342	Manipulations/mRNA Injection	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
166544	David Bartel	The molecular basis of coupling between poly(A)-tail length and translational efficiency	In animal oocytes and early embryos, mRNA poly(A)-tail length strongly influences translational efficiency (TE), but later in development this couplin	David Bartel, Kehui Xiang	RNA-seq, Ribo-seq TAIL-seq, PAL-seq	34213414	58243	SRP305686	oocyte + pabpc1l - oocyte  VI	RNA-Seq	oocyte  VI	oocyte	Xiang K et al. (2021)	GSM5074342	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE166544/XENLA_10.1/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		female organism, head - adult	RNA-Seq	adult 	female organism		GSM5230666	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		male organism, head - adult	RNA-Seq	adult 	head		GSM5230667	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		female organism, ovary - adult	RNA-Seq	adult 	female organism		GSM5230663	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		female organism, lung - adult	RNA-Seq	adult 	female organism		GSM5230668	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		male organism, testis - adult	RNA-Seq	adult 	male organism		GSM5230669	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		 female organism, alimentary system - adult	RNA-Seq	adult 	alimentary system		GSM5230665	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		female organism, heart - adult	RNA-Seq	adult 	female organism		GSM5230670	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		male organism, heart - adult	RNA-Seq	adult 	heart		GSM5230664	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
171687	Aaron Zorn	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues	Sequencing of cDNAs derived from RNA transcripts from nine adult Xenopus tropicalis tissues                                                           	Aaron Zorn, David Hill, Praneet Chaturvedi	Total RNA extracted from nine adult Xenopus tropicalis tissues using standard Qiagen kits. Kapa mRNA Hyper Prep reagents used for the Illumina library prep.	0	58020		female organism, intestine - adult	RNA-Seq	adult 	female organism		GSM5230662	RNA-Seq/Adult Tissues	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE171687/XENTR_10.0/RNA-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		H3K27ac WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241407	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		H3K4me1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241408	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		pan-TLE WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241415	ChIP-Seq/Transcription Factor/Tle	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		ep300 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241416	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		Otx2 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241414	ChIP-Seq/Transcription Factor/Otx2	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		Lhx1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241413	ChIP-Seq/Transcription Factor/Lhx1	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		Gsc WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241406	ChIP-Seq/Transcription Factor/Gsc	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241409	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241410	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241411	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
172076	Aaron Zorn	Occupancies of tissue-specific cis-regulatory modules by Spemann-Mangold organizer-specific transcription factors for embryonic head specification	Spemann-Mangold organizer-specific transcription factors (TFs), Otx2, Lim1/Lhx1, and Gsc, are essential for embryonic head specification. However, the	Aaron Zorn, Yuuri Yasuoka, Yutaka Suzuki, Shuji Takahashi, Norihiro Sudou, Yoshikazu Haramoto, Ken Cho, Makoto Asashima, Sumio Sugano, Masanori Taira	ChIP-seq analyses using Xenopus tropicalis embryos.	0	49342		input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yasuoka Y et al. (2014)	GSM5241412	None	tropicalis	XT100	XENTR_10.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE172076/XENTR_10.0/ChIP-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	forebrain - NF46	RNA-Seq	NF46	forebrain	Ta AC et al. (2022)	GSM5552999,GSM5553000,GSM5553001	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	forebrain - NF46	RNA-Seq	NF46	forebrain	Ta AC et al. (2022)	GSM5552999,GSM5553000,GSM5553001	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	forebrain - NF49	RNA-Seq	NF49	forebrain	Ta AC et al. (2022)	GSM5553011,GSM5553012	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	forebrain - NF49	RNA-Seq	NF49	forebrain	Ta AC et al. (2022)	GSM5553011,GSM5553012	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	hindbrain - NF46	RNA-Seq	NF46	hindbrain	Ta AC et al. (2022)	GSM5553002,GSM5553003,GSM5553004	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	hindbrain - NF46	RNA-Seq	NF46	hindbrain	Ta AC et al. (2022)	GSM5553002,GSM5553003,GSM5553004	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	hindbrain - NF49	RNA-Seq	NF49	hindbrain	Ta AC et al. (2022)	GSM5553013,GSM5553014	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	hindbrain - NF49	RNA-Seq	NF49	hindbrain	Ta AC et al. (2022)	GSM5553013,GSM5553014	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF44	RNA-Seq	NF44	midbrain	Ta AC et al. (2022)	GSM5552996,GSM5552997,GSM5552998	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF44	RNA-Seq	NF44	midbrain	Ta AC et al. (2022)	GSM5552996,GSM5552997,GSM5552998	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF46	RNA-Seq	NF46	midbrain	Ta AC et al. (2022)	GSM5553005,GSM5553006,GSM5553007	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF46	RNA-Seq	NF46	midbrain	Ta AC et al. (2022)	GSM5553005,GSM5553006,GSM5553007	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF49	RNA-Seq	NF49	midbrain	Ta AC et al. (2022)	GSM5553015,GSM5553016	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF49	RNA-Seq	NF49	midbrain	Ta AC et al. (2022)	GSM5553015,GSM5553016	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF55	RNA-Seq	NF55	midbrain	Ta AC et al. (2022)	GSM5553019,GSM5553020,GSM5553021	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF55	RNA-Seq	NF55	midbrain	Ta AC et al. (2022)	GSM5553019,GSM5553020,GSM5553021	RNA-Seq/Embryonic Tissues/Tadpole NF55 to NF57	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF61	RNA-Seq	NF61	midbrain	Ta AC et al. (2022)	GSM5553022,GSM5553023,GSM5553024	RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF61	RNA-Seq	NF61	midbrain	Ta AC et al. (2022)	GSM5553022,GSM5553023,GSM5553024	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF66	RNA-Seq	NF66	midbrain	Ta AC et al. (2022)	GSM5553025	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	midbrain - NF66	RNA-Seq	NF66	midbrain	Ta AC et al. (2022)	GSM5553025	RNA-Seq/Embryonic Tissues/Tadpole NF58 to NF66	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	spinal cord - NF46	RNA-Seq	NF46	spinal cord	Ta AC et al. (2022)	GSM5553008,GSM5553009,GSM5553010	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	spinal cord - NF46	RNA-Seq	NF46	spinal cord	Ta AC et al. (2022)	GSM5553008,GSM5553009,GSM5553010	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	spinal cord - NF49	RNA-Seq	NF49	spinal cord	Ta AC et al. (2022)	GSM5553017,GSM5553018	None	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt
183193	Caroline McKeown	Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles	We conducted differential gene expression analyses of the developing X. laevis tadpole midbrain between stages 44 and 61, and across brain regions at 	Caroline McKeown, Aaron Ta, Lin-Chien Huang, Jennifer Bestman, Kendall Van Keuren-Jensen, Hollis Cline	Comparison of mRNA profiles in the X. laevis midbrain at stages 44, 46, 55, 61; and across the spinal cord, hindbrain, midbrain, and forebrain at stage 46	34751375	58609	SRP335212	spinal cord - NF49	RNA-Seq	NF49	spinal cord	Ta AC et al. (2022)	GSM5553017,GSM5553018	RNA-Seq/Embryonic Tissues/Tadpole NF45 to NF54	laevis	XL101	XENLA_10.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE183193/XENLA_10.1/RNA-Seq/Readme.txt