Xenopus tropicalis 8x Release v5.0 Assembly Stats: Main genome scaffold total: 4297 Main genome contig total: 86871 Main genome scaffold sequence total: 1334.7 MB Main genome contig sequence total: 1230.2 MB (-> 7.8% gap) Main genome scaffold N/L50: 258/1.5 MB Main genome contig N/L50: 11292/31.5 KB Number of scaffolds > 50 KB: 1655 % main genome in scaffolds > 50 KB: 98.6% Minimum Number Number Total Total Scaffold Scaffold of of Scaffold Contig Contig Length Scaffolds Contigs Length Length Coverage -------- --------- ------- ----------- ----------- -------- All 4,297 86,871 1,334,671,625 1,230,207,081 92.17% 1 kb 4,297 86,871 1,334,671,625 1,230,207,081 92.17% 2.5 kb 2,878 85,444 1,332,479,588 1,228,018,061 92.16% 5 kb 2,617 85,135 1,331,603,653 1,227,180,477 92.16% 10 kb 2,246 84,337 1,328,560,409 1,225,282,781 92.23% 25 kb 1,829 83,171 1,322,372,135 1,219,985,139 92.26% 50 kb 1,655 82,353 1,315,784,716 1,215,547,684 92.38% 100 kb 1,425 80,442 1,299,417,565 1,203,286,615 92.60% 250 kb 1,084 75,216 1,244,060,277 1,156,483,192 92.96% 500 kb 785 66,613 1,134,915,571 1,060,796,173 93.47% 1 mb 436 49,986 885,454,718 832,646,273 94.04% 2.5 mb 95 19,031 352,175,250 333,427,262 94.68% 5 mb 10 3,281 61,163,614 57,816,247 94.53% Assembly Notes: Assembly v5.0 is known to be missing transcripts that were present in v4. This is due to v5.0 being built with Arachne which provides a more stringent assembly than the previous JAZZ built versions. An attempt is ongoing to recover this unassembled gene space and add it back to v5.